| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1122 |
|---|
| Symbol | |
|---|
| ID | 1182758 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1235549 |
|---|
| End bp | 1236457 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637392501 |
|---|
| Product | transcriptional regulator, MerR family |
|---|
| Protein accession | NP_790956 |
|---|
| Protein GI | 28868337 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0789] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGAAG CACAAACAGA TACCGAGCTG CCGGGCGACT GGCTGCCGAT CCGGGAAGTC
GCGCGGCAGA CCGGCGTCAA TGCCGTCACC CTGCGCGCGT GGGAACGCCG TTACGGGCTG
ATCGTCCCGC ACCGCACGGC CAAAGGCCAT CGGCTGTACT CGGACGAGCA CGTGCAGCGG
GTCATGAAGA TCCTCACGTG GCTCAATCGG GGCGTGTCTG TCAGCCAGGT CAAAAGCCTG
ATCGATGACA ACCTTCAGGA CGCCCTGCCG CCGACCAGCG ACTGGGACGC GCTGCGCCAG
ACGCTGCTGA TTGCCATCGG CGAACTGGCC GAGCGCCGGG TCGACGACGT GTTCAATCAG
GCGATGGCGC TGTACCCGCC ACGCACCTTG TGCGAACAAC TGCTGCTGCC GCTGCTCGCT
GAACTGGAGC AACGCTGGCA GGGCAAGTTC GGCGCGCAAC TGGAGCGCAC GTTCTTCTAC
TCGTGGTTAC GCAGCAAGTT CGGCGCGCGC ATTTACCACA ACAACCGCCA GCTCAGTGGC
AGCCCGTTGC TGCTGGTCAA TCAGTCCGAT CTGCCGCTTG AACCGCACCT GTGGCTGGCC
GCCTGGCTGG TGAGCAGCGC CGACTGCCCG GTGGAAGTGT TCGACTGGCC GCTGCCGGTT
GGCGAGCTGG CGCTGGCGGC TGAATACCTC AAGCCACGTG GCATATTGCT CTACTCCAGC
AAAGCGTTGA ACGTCGGCCA GCTACCCCGC TTGCTGGCCA ATATTACCTG CCCTGTAGTG
CTCGGCGGAC CAACGGTGAA GATCCATAAC GCCGAGCTGC TCGTACAGGC AAACGAGATA
GCGGGTTTGA CCCTCGTCCA TGATGCGCTC AGCGCTCAGA CCGAGCTGGG CAAGCTCGGA
CTTATCTAA
|
|---|
| Protein sequence | MNEAQTDTEL PGDWLPIREV ARQTGVNAVT LRAWERRYGL IVPHRTAKGH RLYSDEHVQR
VMKILTWLNR GVSVSQVKSL IDDNLQDALP PTSDWDALRQ TLLIAIGELA ERRVDDVFNQ
AMALYPPRTL CEQLLLPLLA ELEQRWQGKF GAQLERTFFY SWLRSKFGAR IYHNNRQLSG
SPLLLVNQSD LPLEPHLWLA AWLVSSADCP VEVFDWPLPV GELALAAEYL KPRGILLYSS
KALNVGQLPR LLANITCPVV LGGPTVKIHN AELLVQANEI AGLTLVHDAL SAQTELGKLG
LI
|
|---|
| |