Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_1117 |
Symbol | |
ID | 1182753 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 1230850 |
End bp | 1231533 |
Gene Length | 684 bp |
Protein Length | 227 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637392496 |
Product | hypothetical protein |
Protein accession | NP_790951 |
Protein GI | 28868332 |
COG category | [S] Function unknown |
COG ID | [COG3496] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGCCTTT CGCCGCTGGC GGGCAGCAGG CGTTTCGCAC CCTTTTCATT CCGTGAGCGC GACTACCTGC CGCAACTGAC CGGGCGCGGC GTGCCGCTGA TAGAGGCGGC ACGCGAACTG GTCGGTAAAG CGCTGGGGCA CATGCCACTG GGTCGCGTCT GCCTGCTGAC CCAGGCGCGC AGCTGGGGCT TGTCGTTCAA CCCGGTGAGT TTTTTCTACT GTCACGAGGC CGACGGCACA TTGGCGGCGA TCCTCTGCGA AGTCACCAAT ACCCCGTGGG GCGAGCGTTA CAGTTATGTA CTGCCAGCCA CCGGCGAAGG CCACCAGCAT TTTTCCGTGG CCAAGGCCTT TCACGTTTCT CCGTTCCTGC CGCGTGACCT TGAATACCGC ATGAGTTTCA GCCAGCCCGC CGAGCGTATC GGCGTGCACA TGGCTGACTG GCAAGGCGAG CTGAAGATGT TTGACGCCAC GCTCAACCTC ACCCGCCAGC AGCTCAGCCG CAAGACGCTG CACCGCTACC TGATTGCTTA TCCATGGATG ACTGCAAAAA CCTGTCTGGC GATTTACTGG CAGGCCATGC GCCTGCTGGT CAAACGCATC CCCATTTTTT CCCATCAGGC CGCCGACGGC GATTACCGTG CTGCCGCCGC GCAACCGAAG GATTCACGCC ATGAAAAGCA GTAG
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Protein sequence | MGLSPLAGSR RFAPFSFRER DYLPQLTGRG VPLIEAAREL VGKALGHMPL GRVCLLTQAR SWGLSFNPVS FFYCHEADGT LAAILCEVTN TPWGERYSYV LPATGEGHQH FSVAKAFHVS PFLPRDLEYR MSFSQPAERI GVHMADWQGE LKMFDATLNL TRQQLSRKTL HRYLIAYPWM TAKTCLAIYW QAMRLLVKRI PIFSHQAADG DYRAAAAQPK DSRHEKQ
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