Gene PSPTO_1117 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1117 
Symbol 
ID1182753 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp1230850 
End bp1231533 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content61% 
IMG OID637392496 
Producthypothetical protein 
Protein accessionNP_790951 
Protein GI28868332 
COG category[S] Function unknown 
COG ID[COG3496] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGCCTTT CGCCGCTGGC GGGCAGCAGG CGTTTCGCAC CCTTTTCATT CCGTGAGCGC 
GACTACCTGC CGCAACTGAC CGGGCGCGGC GTGCCGCTGA TAGAGGCGGC ACGCGAACTG 
GTCGGTAAAG CGCTGGGGCA CATGCCACTG GGTCGCGTCT GCCTGCTGAC CCAGGCGCGC 
AGCTGGGGCT TGTCGTTCAA CCCGGTGAGT TTTTTCTACT GTCACGAGGC CGACGGCACA 
TTGGCGGCGA TCCTCTGCGA AGTCACCAAT ACCCCGTGGG GCGAGCGTTA CAGTTATGTA 
CTGCCAGCCA CCGGCGAAGG CCACCAGCAT TTTTCCGTGG CCAAGGCCTT TCACGTTTCT 
CCGTTCCTGC CGCGTGACCT TGAATACCGC ATGAGTTTCA GCCAGCCCGC CGAGCGTATC 
GGCGTGCACA TGGCTGACTG GCAAGGCGAG CTGAAGATGT TTGACGCCAC GCTCAACCTC 
ACCCGCCAGC AGCTCAGCCG CAAGACGCTG CACCGCTACC TGATTGCTTA TCCATGGATG 
ACTGCAAAAA CCTGTCTGGC GATTTACTGG CAGGCCATGC GCCTGCTGGT CAAACGCATC 
CCCATTTTTT CCCATCAGGC CGCCGACGGC GATTACCGTG CTGCCGCCGC GCAACCGAAG 
GATTCACGCC ATGAAAAGCA GTAG
 
Protein sequence
MGLSPLAGSR RFAPFSFRER DYLPQLTGRG VPLIEAAREL VGKALGHMPL GRVCLLTQAR 
SWGLSFNPVS FFYCHEADGT LAAILCEVTN TPWGERYSYV LPATGEGHQH FSVAKAFHVS 
PFLPRDLEYR MSFSQPAERI GVHMADWQGE LKMFDATLNL TRQQLSRKTL HRYLIAYPWM 
TAKTCLAIYW QAMRLLVKRI PIFSHQAADG DYRAAAAQPK DSRHEKQ