| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1107 |
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| Symbol | |
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| ID | 1182743 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1221082 |
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| End bp | 1222809 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637392486 |
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| Product | TPR domain protein |
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| Protein accession | NP_790941 |
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| Protein GI | 28868322 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAGAT CCTCCGCGTT GTTCCTTGCT CTTGCCTTTC TAGGCGGCTG TCAGTCCATG
ACCCCCGTCT CGTCGCAGCC CGTGCCCGCT CAGAAAGACG CGCCGCCGGC GCCTGAAGCG
AAGCCACAGG TCTATGGCTC GTTCAGCCAG GACACTCTGG TCAGCCTGTT GAGCGCGGAG
CTGGCAGGCC AGCGCAACCG CTTTGACATC GCCCTGGATA ACTACGTGAC CCAGGCGGTC
AAGACTCAGG ACCCGGGCGT TTCCGAGCGC GCTTATCAGA TCGCCGAGTA CATGGGCGCT
GACCAGTCCG CGCTCGAAAC CGCGCTGATC TGGGCAAGAA ACGCGCCGAG CGACCTGGAA
GCAAAACGCG CCGCAGCCAT TCAACTGGCG CGGGCCGGCC GCTACGACGA CTCTCTGGTG
TACATGGAAA GAGTCCTGCA GGGTCAGGGC GACACCCACT TCGACTTTCT CGCCCTGTCT
GCAGCCGAGA CCGACCCGGA CACGCGTAAC GGTCTGCTCA AAAGCTTCGA CCGACTGCTG
GGCAAGTACC CGAAAAACGG CCAGCTGATT TTCGGCAAGG CGCTACTGCT TCAGCAGAAT
GGCGACTCCG AGCAGTCGCT CAAACTGCTC GAAGACAACC CGCCGAAAGA AGGCGAAATC
GCGCCTATCC TGCTTCACGC CCGGCTGCTG CAAAGCATGA ACCGCGGCAA GGAAGCCGTC
CCGCTGCTGG AAAAAAGCAT CAAAAAATAC CCGGACGACA AGCGCCTGCG CCTGACCTAT
GCGCGCATGC TGGTCGAACA GAACCGCATG GAAGACGCCA AAGTGCAGTT TGCCGCACTT
GTGCAGCAGT ACCCTGATGA CGACGAACTG CGTTTCTCGC TGGCACTGGT CTGTCTTGAA
GCCAAGGCCT GGGAGGAAGC GGCGGGTTAT CTGGAAGAAT TGATCGCCCG TGGCGCGCAC
GTGGATTCAG CGCATTTGAA CCTGGGCCGC ATCCACGAAG AACGCGAAGA CCCGCAAAGC
GCGCTCAATG AATACGCTCA GGTCGGACCG GGCCCGGACT TTCTGGCAGC TCAATTGCGC
CAGGCGGACA TTCTGGTCAG CAATGGCAAT GGTGCCGAAG CGGCCAAGCG CCTTTCCGAA
GCCCGCGCCG AAGAGCCGGA TTACGCCATT CAGCTCTACC TGATCGAAGC CGAGACCCTG
ACCAGCAATG ATCAGCTGGA CCGCGGCTGG CAGGTATTGA ATCAGGCGCT CAAGCAATAC
CCGGATGACG CCAATCTGCT CTATACCCGC GCCATGCTGG CTGAAAAACG CAATGATCTG
GCCCAGATGG AGAAAGACCT GCGGACCATC ATCAAGCGCG AACCGGAAAA CGCCATGGCG
CTGAATGCGC TGGGCTACAC CCTTTCTGAT CGCACCACGC GCTACACCGA GGCCCGTGAA
CTGATCGAAA AAGCGCATCA GATCAGCCCC GATGACCCGG CCGTTCTCGA CAGCCTTGGC
TGGGTGAACT ACCGCCTGGG CAATCTGGAC GCCGCCGAAC GCTACCTGCG TCAGGCGCTT
GAGCGCTTCC CGGATCACGA AGTGGCCGCG CATCTGGGCG AAGTGCTGTG GGCCAAAGGC
GATCAGCGCG AAGCTCGACA AGTCTGGGCC AAGGCCCTCG AACAACAACC CGACAGCACC
GTCCTGCGTA GCACTCTGCG ACGCCTGACC GGTTCAGAGA ACCTTTGA
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| Protein sequence | MNRSSALFLA LAFLGGCQSM TPVSSQPVPA QKDAPPAPEA KPQVYGSFSQ DTLVSLLSAE
LAGQRNRFDI ALDNYVTQAV KTQDPGVSER AYQIAEYMGA DQSALETALI WARNAPSDLE
AKRAAAIQLA RAGRYDDSLV YMERVLQGQG DTHFDFLALS AAETDPDTRN GLLKSFDRLL
GKYPKNGQLI FGKALLLQQN GDSEQSLKLL EDNPPKEGEI APILLHARLL QSMNRGKEAV
PLLEKSIKKY PDDKRLRLTY ARMLVEQNRM EDAKVQFAAL VQQYPDDDEL RFSLALVCLE
AKAWEEAAGY LEELIARGAH VDSAHLNLGR IHEEREDPQS ALNEYAQVGP GPDFLAAQLR
QADILVSNGN GAEAAKRLSE ARAEEPDYAI QLYLIEAETL TSNDQLDRGW QVLNQALKQY
PDDANLLYTR AMLAEKRNDL AQMEKDLRTI IKREPENAMA LNALGYTLSD RTTRYTEARE
LIEKAHQISP DDPAVLDSLG WVNYRLGNLD AAERYLRQAL ERFPDHEVAA HLGEVLWAKG
DQREARQVWA KALEQQPDST VLRSTLRRLT GSENL
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