Gene PSPTO_1103 details

Gene Information

• Locus tag: PSPTO_1103
• ID: 1182738
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 1217760
• End bp: 1218371
• Gene Length: 612 bp
• Protein Length: 203 aa
• Translation table: 11
• GC content: 57%
• IMG OID: 637392481
• Product: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5
• Protein accession: NP_790937
• Protein GI: 28868318
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG1825] Ribosomal protein L25 (general stress protein Ctc)
• TIGRFAM ID: [TIGR00731] ribosomal protein L25, Ctc-form

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.72773
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGATT TTACCCTGAA TGCCGAACTG CGTTCCGACC TGGGGAAAGG TGCGAGCCGC 
CGCCTGCGTC GTCTCGCTAG CCTGGTTCCA GCTGTAGTCT ACGGTGGCGA CAAAGCCCCC 
GAGTCCATCA GCATGCTGGC CAAAGAAGTT GCCAAACTGC TCGAGAACGA GGCTTCTTAC 
AGCCACATCA TCGAGCTGAA CGTTGGTGGC ACCAAGCAAA ACGTCATCAT CAAGGCACTG 
CAACGTCACC CGGCCAAAGG CCACGTGCTG CACGCTGACT TCGTACGCGT TGTAGCCGGT 
CAGAAACTGA CCGCTATCGT GCCTGTACAC TTCATCGGCG AAGAAGCTCC GATCAAGAAA 
GGCGGCGAAG TTTCGCACGT AACTTCCGAG CTGGAAGTTT CCTGCCTGCC GAAAGATCTG 
CCTGAGTTCA TCGAAGTAGA CGTGTCTGCT CTGGAAATCG GCTCGATCGT TCACCTGTCC 
GACGTCAAAG CACCGAAAGG CGTTGAGTTC GTAGCACTGG CGCACGGCAA CGACCTGGCC 
ATCGCCAACG TCCACGCACC GCGCGTCGTC AAAGATGAAG ACGAAGAAGC TGCAGAAGGC 
GCTGCCGAGT AA 

 

Protein sequence

MNDFTLNAEL RSDLGKGASR RLRRLASLVP AVVYGGDKAP ESISMLAKEV AKLLENEASY 
SHIIELNVGG TKQNVIIKAL QRHPAKGHVL HADFVRVVAG QKLTAIVPVH FIGEEAPIKK 
GGEVSHVTSE LEVSCLPKDL PEFIEVDVSA LEIGSIVHLS DVKAPKGVEF VALAHGNDLA 
IANVHAPRVV KDEDEEAAEG AAE