| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_1022 |
|---|
| Symbol | hopAM1-1 |
|---|
| ID | 1182656 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 1115514 |
|---|
| End bp | 1116344 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637392401 |
|---|
| Product | type III effector HopAM1-1 |
|---|
| Protein accession | NP_790858 |
|---|
| Protein GI | 28868239 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.322131 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACGCAA ATCCTTTAAG CTCTTTCAAC AGAGCTCAAC ATGGCAATCT GACTAATGTA
GAGGCCAGCC AAGTTAAATC GGCAGGAACC TCTTCCACCA CTAATATAGA CAGTAAAAAC
ATTGAAGAAC ATGTTGCAGA CAGACTCAGT GATTTAGGCA GACCTGATGG TGGATGGTTT
TTCGAGAAGT CACTTGGCAC CTTGAAAAAT TTAAATCTTG AGCAGTTAGC CGGAATCCAT
GATGTACTAA AATTAACAGA TGGCGTAAAG AACATTGTCT CTTTTGGAGC TCGGGAAGGA
GGCTTCGAGT TGGCAATGCA GTTTCGTCAT GATTTATACA GATCTCAACA TCCGGATGAA
AACTCGCCGC ACGATGCCGC AACTCATTAT CTTGATGCAA TCAGCCTGCA ATCAAACAAA
TTTACAAAAC TTGAAAAACT ACAACATGTA GATGTATTTA AAATGCAAAA CCCGTTTTGG
GATGTCGGGT ACAAAAACGG AATTGCGCAC GCAAAAAAAA TGGCATTCTT CATAACGCCA
GAGTGGCTGG GTTCTGATTT CTGTAAACAG GAATTCCAGT GGCTTAGCGA AACAAAAAAC
AAAGACATAA AATCTGCATT TGTGATCTTT AAAGATGTAG ACTTAAAAAG CAAAAATATG
ACAAGTATCT TCAATTTTGC AGACTTCCAT AAATCACGCG TCATGATGGC AAGCACACCT
CCCGAATCGG GATTGAATAA TGTAAAAATC GAAAATAGCG TTGACCTGAA TTTCAAGAGG
TTATTAACTG ACCGTGAGTC ATGGGAACTA AATAATTTCC TAGGCGACTA A
|
|---|
| Protein sequence | MHANPLSSFN RAQHGNLTNV EASQVKSAGT SSTTNIDSKN IEEHVADRLS DLGRPDGGWF
FEKSLGTLKN LNLEQLAGIH DVLKLTDGVK NIVSFGAREG GFELAMQFRH DLYRSQHPDE
NSPHDAATHY LDAISLQSNK FTKLEKLQHV DVFKMQNPFW DVGYKNGIAH AKKMAFFITP
EWLGSDFCKQ EFQWLSETKN KDIKSAFVIF KDVDLKSKNM TSIFNFADFH KSRVMMASTP
PESGLNNVKI ENSVDLNFKR LLTDRESWEL NNFLGD
|
|---|
| |