Gene PSPTO_1009 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_1009 
Symbol 
ID1182643 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand- 
Start bp1102902 
End bp1103528 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content58% 
IMG OID637392390 
Productisochorismatase family protein 
Protein accessionNP_790847 
Protein GI28868228 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1335] Amidases related to nicotinamidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCAACA CCCCCTACAG CCGCCTGAAC AAAGATGACG CGATCGTTCT GCTGATCGAC 
CACCAGACAG GCCTGATCTC GCTGGTGCAG GACTTCTCGC CGAACGAGTT CAAGAACAAC 
GTTTTGGCGC TGGCTGACCT GGCCAGGTTT TTCAAACTGC CGACCATCCT CACCACCAGT 
TTCGAACAAG GCCCCAACGG CCCGCTGGTT CCGGAACTCA AGGCCATGTT TCCCGATGCG 
CCGTACATTG CGCGTCCAGG CCAGATCAAT GCCTGGGATA ACGAAGACTT TGTAAAGGCG 
ATCAAGGCGA CCGGCCGCGA GCAACTGATC ATTGCCGGGG TAGTGACCGA TGTGTGCGTG 
ACCTTTCCGA CCCTGTCGGC ACTGGCTGAA GGGTTTGAAG TGTTCGTGGT CACCGATGCA 
TCCGGCACCT TCAACACCAC GGTTCAACAA GCCGCCTGGT CGCGCATGAC GCAGGCGGGT 
GCACAACTGA TGAACTGGTT CTCGGTGGCC TGTGAGCTGC AGGGTGACTG GCGCAACGAC 
ATCGAAGGTT TGGGTAACCT GCTGTCCGAG CGCATCCCGA ACTACCGCAA CCTGATGAAC 
AGCTATTCGG CACTGACTGC TCGGTAG
 
Protein sequence
MTNTPYSRLN KDDAIVLLID HQTGLISLVQ DFSPNEFKNN VLALADLARF FKLPTILTTS 
FEQGPNGPLV PELKAMFPDA PYIARPGQIN AWDNEDFVKA IKATGREQLI IAGVVTDVCV 
TFPTLSALAE GFEVFVVTDA SGTFNTTVQQ AAWSRMTQAG AQLMNWFSVA CELQGDWRND 
IEGLGNLLSE RIPNYRNLMN SYSALTAR