Gene PSPTO_1001 details

Gene Information

• Locus tag: PSPTO_1001
• ID: 1182635
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: -
• Start bp: 1092695
• End bp: 1094710
• Gene Length: 2016 bp
• Protein Length: 671 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 637392383
• Product: hypothetical protein
• Protein accession: NP_790840
• Protein GI: 28868221

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.0577161
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCTCTT CGTCCGCCGA ACACTGCGCG TCACTGCCGT CCATCCTTGC AGGCCCACTG 
TTACGCCGTC AGGAAGCTGG CCGTCTGGTG CTGTGGCTGG TGGGTTCGCG CCCACTGAAC 
CTGACGTTGA GTCTGCGTCA TGGCGCTGCT GATGCTGCAT CAAGCGGCTT TATCGATTAC 
CCGCTTACCG GCCAGCAATG TCAGGTTGTT GCTGTGGGAC GCCATGCGTT CATTCACCTG 
ATCGACCTGC AACTGGAGGC CGACCTGCCC CTGGACGCAT GGGTCGATTA CGACCTGCGG 
GTCGAGGGCG AACCGGGCGG TATCACAGAA TGGGCGCCGC ACTTGCTGTA CGAAGGTGCC 
GTTTATCCGA ACTTTGTCGT GCGCAGCAGC ATCGACCATC TGCTGCATGG CTCTTGCCGC 
AAGCCACACC ATTGCGCCGC AGAGGGCCTG CTTTGTGTGG ACCGCTTGCT GGCCGACACC 
CAAGACCCGC TGCAACGCCC TGCCCTGTTG ATGATGAGCG GCGACCAGAT CTACGCCGAT 
GATGTGGCAG GCCCGATGCT GCGCGCCATT CATGCGCTGA TCGAACGGTT GGGGCTGTTC 
GATGAGCACC TCGACGGTGC GGTGGTCGAT GACAGCGCCA GCCTTTATCA GCATCCGGCC 
AGTTATTACC AGCGTGCCGA CCTGCTGCCT GCGCTGAAAA GCAACGACAC GCTACGCGAG 
CGTTTCTTCG GTGGCGCAAG CAAGCCGGTG TTCACCAGCA GCACCGCCGA CAATCACCTG 
GTGACCCTGG CAGAAGTCAT GGCGATGTAC CTGCTGGTCT GGTCGCCTAC GCCCTGGACG 
TTAATCGAGC CGGACATGCC GCAACTCGAC GCCGAGGAGC TGGAGCGTTA CGCCAACGAA 
CAGCAACTGA TCGATGGTTT CGTTGCCGGG CTGGGCGGCG TGGCGCGGGC GATGGCGCAT 
GTGCCGTGCA TGATGATCTT CGATGACCAT GACATCACCG ATGACTGGAA CCTCTCGGCG 
AACTGGGAAG AAACGGCCTA CGGCCACCCG TTTTCGAAGC GCATCATCGG CAACGCCTTG 
CTTGCCTACT TGCTCTGTCA GGGCTGGGGC AACAACCCTG ACGCGCTCAA TGAGCTCGTC 
GGGCGGGCGC AGGACCTCAG TGGCCAGGCT GTGCGCAACA ATCACTGGCT GGACAGCACT 
TCCCAGAACA CCCTGATCGA TCAGTTGCTG AAATTTCAGC AGTGGCACTA CGTGCTGCCG 
ACCCACCCGG CGCTGGTGGT ACTGGACACC CGGACCCGGC GCTGGCGCAG CGAGTCGAAT 
TTCAACCATC CGTCAGGATT GCTGGACTGG GAAGCGCTCT GCGAGCTGCA ACAGGAACTG 
ATCGATCATA AATCAGCGAT TATCGTGTCG CCTGCCCCGG TGTTTGGCGT CAAGCTGATC 
GAGGCGATTC AGCGGGTTTT CAGCTGGTGT GGCTATCCGT TGCTGGTGGA CGCAGAAAAC 
TGGATGGCCC ACCGCGGCGC AGCCAATGTC ATTCTGAACA TCTTTCGCCA CTCCAGAACA 
CCGGGCAATT ACGTGATTCT GTCAGGCGAT GTGCACTACT CGTTCGTCTA CGAAATTCTG 
ATTCGCCACC GCAGCGGCAG CCCGCATATC TGGCAGATCA CCAGCAGCGG TATCAAAAAT 
GAATTCCCCC GACGCTTGCT GGATACTTTT GATCGGCTGA ATCGCTGGTT ATACTCACCC 
CGCTCACCAT TGAACTGGTT CACCAAGCGA CGCCTGATGA AGGTCATCCC GCGCACGCCC 
GAGCACAGCA AGGCCGGTGA ACGCTTATGG AATTCGGCAG GTATCGGTCA GGTATTTTTC 
AATGACCAAG GCCAGCCGAC ACGGATCAAC CAGCTCAATG CCAATGGTGA CTCGCCCACT 
CGTTTCGTCG AACCGGAGGA ATACAGAGAC GAACGGTCCG GTAACGATCG CGGTTTTCTG 
GAAAACAACC GGGAAACAAG GGATAGTCAC CGCTAA 

 

Protein sequence

MSSSSAEHCA SLPSILAGPL LRRQEAGRLV LWLVGSRPLN LTLSLRHGAA DAASSGFIDY 
PLTGQQCQVV AVGRHAFIHL IDLQLEADLP LDAWVDYDLR VEGEPGGITE WAPHLLYEGA 
VYPNFVVRSS IDHLLHGSCR KPHHCAAEGL LCVDRLLADT QDPLQRPALL MMSGDQIYAD 
DVAGPMLRAI HALIERLGLF DEHLDGAVVD DSASLYQHPA SYYQRADLLP ALKSNDTLRE 
RFFGGASKPV FTSSTADNHL VTLAEVMAMY LLVWSPTPWT LIEPDMPQLD AEELERYANE 
QQLIDGFVAG LGGVARAMAH VPCMMIFDDH DITDDWNLSA NWEETAYGHP FSKRIIGNAL 
LAYLLCQGWG NNPDALNELV GRAQDLSGQA VRNNHWLDST SQNTLIDQLL KFQQWHYVLP 
THPALVVLDT RTRRWRSESN FNHPSGLLDW EALCELQQEL IDHKSAIIVS PAPVFGVKLI 
EAIQRVFSWC GYPLLVDAEN WMAHRGAANV ILNIFRHSRT PGNYVILSGD VHYSFVYEIL 
IRHRSGSPHI WQITSSGIKN EFPRRLLDTF DRLNRWLYSP RSPLNWFTKR RLMKVIPRTP 
EHSKAGERLW NSAGIGQVFF NDQGQPTRIN QLNANGDSPT RFVEPEEYRD ERSGNDRGFL 
ENNRETRDSH R