| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0973 |
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| Symbol | deoC |
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| ID | 1182602 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 1058084 |
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| End bp | 1058863 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637392350 |
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| Product | deoxyribose-phosphate aldolase |
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| Protein accession | NP_790812 |
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| Protein GI | 28868193 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0274] Deoxyribose-phosphate aldolase |
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| TIGRFAM ID | [TIGR00126] deoxyribose-phosphate aldolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000205356 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAGAAC TGACGGCAGA TGATGAGCGA CTGGCGCGCA AGGCCATAGA GTTGCTGGAG
CTGTTCGCCC TCAATATCGA TGATACCGAG CAGCGTATTG TCGGTGTCTG CCAGCGCGCG
TGGACGCCCG TGGGACCTGT CGCTGCCGTT TGTGTCCAGC AGCGCTTCGT GTGCCTGGCG
CGAACGACCC TGGACCGCAT GTACGCGAGG GATATAAAAG TGGTGGCCGT CGTCAACTTC
CCGCATGGCG GCAGCAACGT CGATTTGGTG GCCTCCGAGG TGCGCTCAGC CCTGATGTCC
GGGGCTGACG AAATCGATGT TGTCTATCCG TTCCGCGCGC TGCTGGGCGG TGACCGGCAG
ACCGGTATGG AATTGCTCGC TACCTGTGCG AAGTTATGCA GCGGGCGCGC AACGTTGACG
GCGACGCTTG AAACCGGTGA CCTGCGTGAC TCGCAAATGA TCCTCGACGC CTGTCGCGAT
GCGATTGCGT CGGGCGCTGA CTTCATCAAG ACCAGCACCG GCAAGGCAGC CGTTCATGTC
ACGCCACAGG CTGCACGCAT CATGCTGGGA GCCCTGGCTG ATGTCGGCGG GCAGGCCGGG
CTCAAAGTCG CGGGCGGGCT TCGCACCTTT GAAGAGGCGC GCGCGTACAT GGCTATGGCC
CGTGGCCGTT TCGGGCCGCA GTGGGTCAAT ATCAGGCGGG TGCGGCTGGG TGGCTCCAGT
TTGCTGGACG ATTTGCTGGC AAGTCTGGGC CTGCTCGAAG CTAGCAGCAG CGGCTTTTGA
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| Protein sequence | MKELTADDER LARKAIELLE LFALNIDDTE QRIVGVCQRA WTPVGPVAAV CVQQRFVCLA
RTTLDRMYAR DIKVVAVVNF PHGGSNVDLV ASEVRSALMS GADEIDVVYP FRALLGGDRQ
TGMELLATCA KLCSGRATLT ATLETGDLRD SQMILDACRD AIASGADFIK TSTGKAAVHV
TPQAARIMLG ALADVGGQAG LKVAGGLRTF EEARAYMAMA RGRFGPQWVN IRRVRLGGSS
LLDDLLASLG LLEASSSGF
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