| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0970 |
|---|
| Symbol | |
|---|
| ID | 1182599 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 1055626 |
|---|
| End bp | 1056798 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637392347 |
|---|
| Product | aminotransferase, classes I and II |
|---|
| Protein accession | NP_790809 |
|---|
| Protein GI | 28868190 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.103563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGC CCTACAGCGC TCGCAGTCGC GCCATCGAAC CCTTTCATGT CATGGCGTTG
CTGGCGCGTG CCAATGAGTT GCAGGCGGCA GGTCATGATG TCATTCACCT TGAAATTGGC
GAGCCTGACT TCATTACCGC AGAGCCGATC ATCAAGGCAG GACAGGCGGC GCTGGCAGAC
GGCAAGACCC GCTATACCGC CGCCCGCGGC CTGCCACAAC TGCGCGAAGC GATTGCCGGG
TTCTACGCCC AGCGCTACCA GCTCGATATC GATCCGCAGC GAATTCTGGT CACGCCGGGT
GGCTCCGGAG CCCTGTTGCT GGCCAGCAGC CTGCTGGTCG ATCCGGGCAA GCACTGGTTA
CTGGCCGATC CGGGTTACCC GTGCAATCGA CACTTTTTGC GCTTGATCGA AGGCGAGGCG
CAACTGGTGC CGGTCGGCCC GCAGGAACGT TATCAATTGA CCCCCGAGCT GGTGGCGAGT
CACTGGAACC CGAACAGCGT GGGCGCATTG GTGGCATCGC CCGCCAACCC CACCGGCACC
CTGTTGACGC GTGATGAACT GGCGGCGCTG TCCAGCGCGC TCAAAGCCCG CAACGGTCAC
CTCGTGGTGG ACGAGATCTA CCACGGCCTG ACTTATGGCG TGGACGCCAG CAGCGTGCTG
GAGGTGGACA ACGAAGCGTT CGTCCTTAAT AGCTTTTCAA AATATTTCGG CATGACTGGC
TGGCGCCTGG GGTGGCTGGT TGCGCCACCG GAGGCGGTGG CCGATCTCGA AAAACTGGCG
CAGAACCTCT ACATCAGTGC TCCTAGCATG GCGCAATATG CCGCGCTAGC GTGTTTCGAG
CCGCAGACGC TGGCGATTCT GGAGCAGCGC CGCGCCGAAT TCGGTCGTCG TCGGGATTTT
CTTCTGCCAG CCCTGCGGGA ACTGGGTTTC GGCATTGCCG TCGAGCCAGA AGGAGCGTTC
TATTTGTATG CCGATATTTC AGCATTTGGC GGCGATGCCT TCGCGTTCTG CAAACATTTT
CTGGAAACCG AGCACGTCGC CTTTACGCCC GGTCTGGACT TTGGCCGTTT CCAGGCGGGG
CATCATGTAC GGTTCGCTTA TACGCAAAGC CTGCCACGCC TGGAGCAGGC GGTTGAGCGA
ATTGCTCGTG GCTTGCGTAG CTGGAGCGCC TGA
|
|---|
| Protein sequence | MTQPYSARSR AIEPFHVMAL LARANELQAA GHDVIHLEIG EPDFITAEPI IKAGQAALAD
GKTRYTAARG LPQLREAIAG FYAQRYQLDI DPQRILVTPG GSGALLLASS LLVDPGKHWL
LADPGYPCNR HFLRLIEGEA QLVPVGPQER YQLTPELVAS HWNPNSVGAL VASPANPTGT
LLTRDELAAL SSALKARNGH LVVDEIYHGL TYGVDASSVL EVDNEAFVLN SFSKYFGMTG
WRLGWLVAPP EAVADLEKLA QNLYISAPSM AQYAALACFE PQTLAILEQR RAEFGRRRDF
LLPALRELGF GIAVEPEGAF YLYADISAFG GDAFAFCKHF LETEHVAFTP GLDFGRFQAG
HHVRFAYTQS LPRLEQAVER IARGLRSWSA
|
|---|
| |