Gene PSPTO_0956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0956 
Symbol 
ID1182585 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp1036557 
End bp1038311 
Gene Length1755 bp 
Protein Length584 aa 
Translation table11 
GC content62% 
IMG OID637392333 
Productphosphotransferase system, fructose-specific IIBC component 
Protein accessionNP_790795 
Protein GI28868176 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1299] Phosphotransferase system, fructose-specific IIC component
[COG1445] Phosphotransferase system fructose-specific component IIB 
TIGRFAM ID[TIGR00829] PTS system, fructose-specific, IIB component
[TIGR01427] PTS system, fructose subfamily, IIC component 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGTTAG CCATAGTTAC GGCCTGCCCG AACGGCAAGG TCAGCAGCGT ACTCAGCGCA 
CGATTGCTCG AAGCGGCGGC ACTGCGCCAA GGCTGGGAAA CCAGCGTCGA AATCATCGAC
CCCAACAAGG CCGATCAGCA GCTGTCGCCT GAGGATATCC AGGCCGCTGA TCTGGTGCTG
GTGGTCAATA CCGGCCCGGT AGACCTGAGC CGCTTTGTCG GCAAGCGTCT GTTTCAGGAC
TCGCCTGCCC ATGCGTTACA GGATGTAGAC GGGTTTCTGC AACGCGTCGC GAAAGAGGCA
CAGGTGTATG TGGCGTCTCA GGCAGCCGCG CCTCAAGCCA CTGGAACTTC CGTTGGCAAC
GCCGGGGCAA AACCGCGCAT CGTTGCGATC ACGGCCTGCC CGACCGGTGT TGCGCACACA
TTCATGGCCG CCGAGGCGAT CCAGCAGGCG GCCAAGCGTC TGGATTATGA CCTGCAGGTC
GAAACCCAGG GGTCGGTCGG CGCGCGCAAT CCACTCAGTG CTCAAGCCAT TGCTGATGCC
GACGTGGTGT TGCTGGCTGC CGATATCGAG GTCAACACCG ACCGTTTTGC GGGCAAGAAA
ATCTACCGTT GCGGCACCGG GATTGCGCTG AAGCAATCCG AAGCGACGCT GAAAAAGTCC
TTGGCAGAAG GTCAGGTCGA ATCTGACGAG GCGACCGCCA AGTCGCCCGC CAAGCAAGAG
AAGACCGGGG TCTACAAGCA CCTGCTGACC GGCGTGTCGT TCATGCTGCC GATGGTGGTG
GCGGGTGGTT TGTTGATTGC GCTGTCGTTC GTGTTCGGCA TTACCGCGTT CAAGGAGCAG
GGCACGCTGG CGGCGGCCTT GATGCAGATT GGCGGGGAAG CTGCGTTCAA ACTGATGGTG
CCGTTGCTGG CCGGTTACAT TGCTTATTCG ATTGCTGACC GTCCGGGTCT GGCACCGGGG
ATGATCGGTG GTTTGCTGGC GACAACGCTG GGTGCCGGGT TCATCGGCGG TATCATCGCC
GGTTTTCTGG CCGGGTACAG CGCGGCGGCG ATCAACCGTT ATGCACGCCT GCCTGCCAGC
GTCGAAGCGC TCAAGCCGAT CCTGATCATT CCGTTGCTGT CGAGCCTGTT CACCGGTCTG
GTGATGATCT ACGTGGTCGG CAAGCCGGTG GCGGGCATGC TCGAAGCGCT GACGCACTTC
CTCGACAGCA TGGGCACCAC CAACGCGATT CTGCTGGGCG TGTTGCTGGG CGCGATGATG
TGTGTCGATC TGGGCGGGCC GATCAACAAG GCCTCCTATG CGTTCTCGGT CGGCCTGCTG
GCGTCACAGA GCTACGCGCC GATGGCCGCT GCGATGGCTG CTGGCATGGT GCCGCCGATC
GGTATGGGCA TCGCCACCCT CCTGGCGCGC CGCAAGTTCG CGCAAAGCGA GCGTGAGGCA
GGCAAGGCGG CCTTCGTGCT GGGGTTGTGC TTCATTTCGG AAGGTGCCAT TCCATTCGCC
GCCAAGGACC CGTTGCGGGT GATTCCGGCC AGTGTAGTTG GCGGTGCGCT GACCGGTGCA
TTGTCGATGT ATTTTGGCTG CAAGCTGATG GCACCGCACG GCGGGCTGTT CGTGATGCTG
ATCCCTAACG CCATCAACCA TGCGCTGCTT TATCTGCTGG CGATTGTTGC CGGTAGCGTA
CTGACCGGTG TGGTCTACGC GCTGATCAAG CGGCCTGAGC CTGTCGAGCT GGAAGCGGCG
CCCGCCGGCG CCTGA
 
Protein sequence
MKLAIVTACP NGKVSSVLSA RLLEAAALRQ GWETSVEIID PNKADQQLSP EDIQAADLVL 
VVNTGPVDLS RFVGKRLFQD SPAHALQDVD GFLQRVAKEA QVYVASQAAA PQATGTSVGN
AGAKPRIVAI TACPTGVAHT FMAAEAIQQA AKRLDYDLQV ETQGSVGARN PLSAQAIADA
DVVLLAADIE VNTDRFAGKK IYRCGTGIAL KQSEATLKKS LAEGQVESDE ATAKSPAKQE
KTGVYKHLLT GVSFMLPMVV AGGLLIALSF VFGITAFKEQ GTLAAALMQI GGEAAFKLMV
PLLAGYIAYS IADRPGLAPG MIGGLLATTL GAGFIGGIIA GFLAGYSAAA INRYARLPAS
VEALKPILII PLLSSLFTGL VMIYVVGKPV AGMLEALTHF LDSMGTTNAI LLGVLLGAMM
CVDLGGPINK ASYAFSVGLL ASQSYAPMAA AMAAGMVPPI GMGIATLLAR RKFAQSEREA
GKAAFVLGLC FISEGAIPFA AKDPLRVIPA SVVGGALTGA LSMYFGCKLM APHGGLFVML
IPNAINHALL YLLAIVAGSV LTGVVYALIK RPEPVELEAA PAGA