Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0956 |
Symbol | |
ID | 1182585 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 1036557 |
End bp | 1038311 |
Gene Length | 1755 bp |
Protein Length | 584 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637392333 |
Product | phosphotransferase system, fructose-specific IIBC component |
Protein accession | NP_790795 |
Protein GI | 28868176 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1299] Phosphotransferase system, fructose-specific IIC component [COG1445] Phosphotransferase system fructose-specific component IIB |
TIGRFAM ID | [TIGR00829] PTS system, fructose-specific, IIB component [TIGR01427] PTS system, fructose subfamily, IIC component |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGTTAG CCATAGTTAC GGCCTGCCCG AACGGCAAGG TCAGCAGCGT ACTCAGCGCA CGATTGCTCG AAGCGGCGGC ACTGCGCCAA GGCTGGGAAA CCAGCGTCGA AATCATCGAC CCCAACAAGG CCGATCAGCA GCTGTCGCCT GAGGATATCC AGGCCGCTGA TCTGGTGCTG GTGGTCAATA CCGGCCCGGT AGACCTGAGC CGCTTTGTCG GCAAGCGTCT GTTTCAGGAC TCGCCTGCCC ATGCGTTACA GGATGTAGAC GGGTTTCTGC AACGCGTCGC GAAAGAGGCA CAGGTGTATG TGGCGTCTCA GGCAGCCGCG CCTCAAGCCA CTGGAACTTC CGTTGGCAAC GCCGGGGCAA AACCGCGCAT CGTTGCGATC ACGGCCTGCC CGACCGGTGT TGCGCACACA TTCATGGCCG CCGAGGCGAT CCAGCAGGCG GCCAAGCGTC TGGATTATGA CCTGCAGGTC GAAACCCAGG GGTCGGTCGG CGCGCGCAAT CCACTCAGTG CTCAAGCCAT TGCTGATGCC GACGTGGTGT TGCTGGCTGC CGATATCGAG GTCAACACCG ACCGTTTTGC GGGCAAGAAA ATCTACCGTT GCGGCACCGG GATTGCGCTG AAGCAATCCG AAGCGACGCT GAAAAAGTCC TTGGCAGAAG GTCAGGTCGA ATCTGACGAG GCGACCGCCA AGTCGCCCGC CAAGCAAGAG AAGACCGGGG TCTACAAGCA CCTGCTGACC GGCGTGTCGT TCATGCTGCC GATGGTGGTG GCGGGTGGTT TGTTGATTGC GCTGTCGTTC GTGTTCGGCA TTACCGCGTT CAAGGAGCAG GGCACGCTGG CGGCGGCCTT GATGCAGATT GGCGGGGAAG CTGCGTTCAA ACTGATGGTG CCGTTGCTGG CCGGTTACAT TGCTTATTCG ATTGCTGACC GTCCGGGTCT GGCACCGGGG ATGATCGGTG GTTTGCTGGC GACAACGCTG GGTGCCGGGT TCATCGGCGG TATCATCGCC GGTTTTCTGG CCGGGTACAG CGCGGCGGCG ATCAACCGTT ATGCACGCCT GCCTGCCAGC GTCGAAGCGC TCAAGCCGAT CCTGATCATT CCGTTGCTGT CGAGCCTGTT CACCGGTCTG GTGATGATCT ACGTGGTCGG CAAGCCGGTG GCGGGCATGC TCGAAGCGCT GACGCACTTC CTCGACAGCA TGGGCACCAC CAACGCGATT CTGCTGGGCG TGTTGCTGGG CGCGATGATG TGTGTCGATC TGGGCGGGCC GATCAACAAG GCCTCCTATG CGTTCTCGGT CGGCCTGCTG GCGTCACAGA GCTACGCGCC GATGGCCGCT GCGATGGCTG CTGGCATGGT GCCGCCGATC GGTATGGGCA TCGCCACCCT CCTGGCGCGC CGCAAGTTCG CGCAAAGCGA GCGTGAGGCA GGCAAGGCGG CCTTCGTGCT GGGGTTGTGC TTCATTTCGG AAGGTGCCAT TCCATTCGCC GCCAAGGACC CGTTGCGGGT GATTCCGGCC AGTGTAGTTG GCGGTGCGCT GACCGGTGCA TTGTCGATGT ATTTTGGCTG CAAGCTGATG GCACCGCACG GCGGGCTGTT CGTGATGCTG ATCCCTAACG CCATCAACCA TGCGCTGCTT TATCTGCTGG CGATTGTTGC CGGTAGCGTA CTGACCGGTG TGGTCTACGC GCTGATCAAG CGGCCTGAGC CTGTCGAGCT GGAAGCGGCG CCCGCCGGCG CCTGA
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Protein sequence | MKLAIVTACP NGKVSSVLSA RLLEAAALRQ GWETSVEIID PNKADQQLSP EDIQAADLVL VVNTGPVDLS RFVGKRLFQD SPAHALQDVD GFLQRVAKEA QVYVASQAAA PQATGTSVGN AGAKPRIVAI TACPTGVAHT FMAAEAIQQA AKRLDYDLQV ETQGSVGARN PLSAQAIADA DVVLLAADIE VNTDRFAGKK IYRCGTGIAL KQSEATLKKS LAEGQVESDE ATAKSPAKQE KTGVYKHLLT GVSFMLPMVV AGGLLIALSF VFGITAFKEQ GTLAAALMQI GGEAAFKLMV PLLAGYIAYS IADRPGLAPG MIGGLLATTL GAGFIGGIIA GFLAGYSAAA INRYARLPAS VEALKPILII PLLSSLFTGL VMIYVVGKPV AGMLEALTHF LDSMGTTNAI LLGVLLGAMM CVDLGGPINK ASYAFSVGLL ASQSYAPMAA AMAAGMVPPI GMGIATLLAR RKFAQSEREA GKAAFVLGLC FISEGAIPFA AKDPLRVIPA SVVGGALTGA LSMYFGCKLM APHGGLFVML IPNAINHALL YLLAIVAGSV LTGVVYALIK RPEPVELEAA PAGA
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