| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0926 |
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| Symbol | pilB |
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| ID | 1182555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1005287 |
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| End bp | 1006981 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637392303 |
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| Product | type IV pilus biogenesis protein PilB |
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| Protein accession | NP_790765 |
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| Protein GI | 28868146 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGATG CTGTCCTCAC TGGCTTGGCC AAACAATTGG TCCTCGCCGA GCTCCTTACT
GAACCTGTTG CGCAGCAAGC TTATCAACAG GCGCGCCGCG ACAAGATTTC GTTGGTGAGC
TATCTGGTTC AGAACAAACT GGTCAAAAGC CTGACGCTAG CGGAATTGGC TTCTGATCAG
TTCGGCGTTC CGTTCATGGA CCTCGCCAGC CTGGACAAGG AAAGCCAGCC AAAGGGGCTG
GTCAGCGAGA AGCTGGTCAG ACAACACCAC GCCCTGCCGC TGTGGCGACG TGGTAACAAG
CTGTTTATAG GCATCTCGGA CCCGACCAAC CATCAGGCGG TCACTGACAT ACAGTTCAGC
ACTGGCCTGA ATACCGAAGC AATTCTGGTC GAAGATGACA AGCTGACCAC TGCGATAGAT
CGATTCTTTG ACAGTGACAG CGGTCTGGGC AACCTGGAAG ATGTCGATCT GGGTCTGGAT
ATCGAACCGG CTGATGGCAA GGAAACGTCA CTCGCGACGC AGAATGACGC TGACGATGCC
CCGGTGGTAC GTTTCGTCAA CAAAATGCTG TTGGATGCCA TCCGGTTAGG ATCATCAGAC
TTGCACTTCG AGCCCTACGA AAAGATCTTT CGCGTGCGCT TGCGTACCGA TGGCATTTTG
CATGAGGTTG CTAGGCCTCC GATTCATCTG GCAAACCGTA TTGCTGCACG CCTGAAAGTC
ATGGCGAGCC TCGACATTTC GGAGCGACGC AAACCGCAGG ACGGCCGGGT CAAGTTGCGG
GTGTCCAAAA CAAAGGCCAT CGATTTTCGT ATGAACACCT TGCCCACCCT GTGGGGCGAG
AAGATCGTGA TGCGGATTCT CGACCCGACC AGTGCGCAGA TGGGTATTGA TGCTCTGGGC
TACGAGCCGG AGCAAAAAGC GTTGTATCTG GAGGCACTGA AACAGCCGCA GGGCATGATT
CTTGTGACTG GCCCCACGGG TTCCGGCAAG ACCGTTTCTC TGTATACCGG TCTGAACATA
CTCAATACCG TGGACATCAA CATTTCCACA GCCGAAGACC CGGTAGAGAT CAACCTGGAA
GGCATCAATC AGGTCAACGT GAACCCACGC CAAGGATTGG ACTTTTCGCA GGCATTGCGC
GCCTTCCTGC GTCAAGATCC CGACGTGATC ATGGTCGGCG AGATTCGCGA CCTGGAAACC
GCCGAAATCG CCATCAAGGC GTCACAGACT GGCCACATGG TGCTGTCCAC CCTGCATACC
AACAGCGCGG CAGAAACCTT GACGCGACTG CATCATATGG GCGTAGCCGC ATTCAACATT
GCCACAGCAA TCAATCTGAT TATTGCGCAA CGGCTCGCCC GTAAGCTGTG CAGTCATTGC
AAGAAAGAGC TCGATATTCC TCGCGAGACA CTGATTCGGG AAGGTTTTCC AGAAGCGAAG
ATTGGCACTT TCAAGATCTA TGGACCGGTG GGCTGCGAGC ATTGCAACGG CGGTTACAGA
GGCAGGGTCG GTATCTACGA AGTCGTCAAG AAAACAGCAG AGCTGGAGCG CATCATCATG
GAAGAGGGTA ATTCACTGGA GATTTCCAGG CAGATGCGCA AGGACGGTTT CAATGACCTG
CGAACCTCGG GCCTGTCAAA AGCCATGCAG GGCATTACCA GCCTTGAAGA AGTCAACCGC
GTGACCAAGG ATTAA
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| Protein sequence | MTDAVLTGLA KQLVLAELLT EPVAQQAYQQ ARRDKISLVS YLVQNKLVKS LTLAELASDQ
FGVPFMDLAS LDKESQPKGL VSEKLVRQHH ALPLWRRGNK LFIGISDPTN HQAVTDIQFS
TGLNTEAILV EDDKLTTAID RFFDSDSGLG NLEDVDLGLD IEPADGKETS LATQNDADDA
PVVRFVNKML LDAIRLGSSD LHFEPYEKIF RVRLRTDGIL HEVARPPIHL ANRIAARLKV
MASLDISERR KPQDGRVKLR VSKTKAIDFR MNTLPTLWGE KIVMRILDPT SAQMGIDALG
YEPEQKALYL EALKQPQGMI LVTGPTGSGK TVSLYTGLNI LNTVDINIST AEDPVEINLE
GINQVNVNPR QGLDFSQALR AFLRQDPDVI MVGEIRDLET AEIAIKASQT GHMVLSTLHT
NSAAETLTRL HHMGVAAFNI ATAINLIIAQ RLARKLCSHC KKELDIPRET LIREGFPEAK
IGTFKIYGPV GCEHCNGGYR GRVGIYEVVK KTAELERIIM EEGNSLEISR QMRKDGFNDL
RTSGLSKAMQ GITSLEEVNR VTKD
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