| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0925 |
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| Symbol | pilC |
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| ID | 1182554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1004067 |
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| End bp | 1005284 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637392302 |
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| Product | type IV pilus biogenesis protein PilC |
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| Protein accession | NP_790764 |
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| Protein GI | 28868145 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAGCA AGGCAGTCAA AGTCATCGTT TACACGTGGG AAGGTGTAGA CAAGAAGGGT
ACTAAAACCA GTGGCGAACT GAGCGGCCAT AACCTCGCCC TCGTAAAAGC CCAACTGCGC
AAGCAAGGCA TCAACCCGAC CAAGGTGCGC AAGAAGTCTG TATCAATCTT CGGCAAAGGC
AAGAAGATCA AGCCGCTGGA CATTGCTTTC TTCTCTCGAC AGATGGCGAC GATGATGAAG
GCCGGTGTCC CGCTGCTACA GTCATTCGAT ATCATCAGCG AGGGCGCAGA AAACCCAAAC
ATGCGGACGC TCGTGGACTC TCTCAAGCAA GAGGTTTCAG CTGGCAATAG CTTCGCAACA
GCCCTGCGAA GAAAGCCTGA ATATTTCGAC GAACTCTTCT GTAACTTGGT AGATGCAGGC
GAACAGGCCG GAGCACTTGA AAGTTTGCTT GACCGAGTAG CAAGTTATAA AGAAAAAACC
GAAAAACTCA AGGCAAAGAT CAAGAAAGCC ATGACTTATC CTGCTGCGGT ATTAATTGTT
GCTGTTATCG TATCAGGAAT ACTTCTCATA AAGGTTGTAC CACAGTTTCA GTCTATATTT
GCCAGTTTTG GCGCGGATTT ACCTGCATTT ACTCTGATGG TTATCGGTCT TTCAGACATT
GTGCAAAAAT GGTGGTTGAT AATCGTCATC GCCTTTTTTG CTACTATTTT TATGCTTAAG
CGAGCATACA AAAAATCGCA AAATTTTCGC GACGCCCTTG ACCGTTTTCT GCTGAAATTA
CCCATTATTG GCCCTCTGAT TTTCAAATCA TCGGTCGCAC GCTACGCACG CACTCTCGCA
ACAACTTTTG CGGCGGGCGT ACCGTTGGTA GAAGCCTTGG ACTCGGTAGC AGGGGCTACC
GGTAATGTAG TATTTAAGAA TGCGGTTAAC AGGGTTAAGC AGGACGTCTC TACCGGAATG
CAGCTGAACT TTTCAATGCG TTCAACTGGA GTATTTCCGA GCTTGGCTAT ACAGATGACA
TCGATCGGGG AAGAGTCGGG GGCACTTGAT GCGATGCTTG ATAAAGTAGC GACCTATTAC
GAAGAAGAAG TCGATAATAT GGTCGACAAT CTGACCAGCC TGATGGAGCC CATGATCATG
GCGATACTGG GTGTCATCGT CGGCGGCCTT GTTATTGCCA TGTACCTCCC CATCTTCAAA
CTCGGAAACG TCGTCTGA
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| Protein sequence | MASKAVKVIV YTWEGVDKKG TKTSGELSGH NLALVKAQLR KQGINPTKVR KKSVSIFGKG
KKIKPLDIAF FSRQMATMMK AGVPLLQSFD IISEGAENPN MRTLVDSLKQ EVSAGNSFAT
ALRRKPEYFD ELFCNLVDAG EQAGALESLL DRVASYKEKT EKLKAKIKKA MTYPAAVLIV
AVIVSGILLI KVVPQFQSIF ASFGADLPAF TLMVIGLSDI VQKWWLIIVI AFFATIFMLK
RAYKKSQNFR DALDRFLLKL PIIGPLIFKS SVARYARTLA TTFAAGVPLV EALDSVAGAT
GNVVFKNAVN RVKQDVSTGM QLNFSMRSTG VFPSLAIQMT SIGEESGALD AMLDKVATYY
EEEVDNMVDN LTSLMEPMIM AILGVIVGGL VIAMYLPIFK LGNVV
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