| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0924 |
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| Symbol | pilD |
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| ID | 1182553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 1003193 |
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| End bp | 1004065 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637392301 |
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| Product | type IV pilus prepilin peptidase PilD |
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| Protein accession | NP_790763 |
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| Protein GI | 28868144 |
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| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCTCC TCGACCTCTT GGCCAGCTCT CCCCTGGCCT TCGTCACCAC CTGCTGCCTA
CTTGGCCTGA TCGTCGGAAG CTTCCTCAAC GTGGTCGTCT ACCGCCTCCC AAAAATGATG
GAGCGCGACT GGAAAGTACA ATCACGGGAA ATGCTAGGCC TCCCTGCCGA ACCGGACCAA
CCCGTCTTCA ACCTGATCCT GCCGCACTCA AGCTGCCCGC ACTGCGCGCA CAAGATCCGC
CCGTGGGAAA ACCTGCCGGT CATCAGTTAC CTGTTGCTGC GCGGCAAATG CTCGCAATGC
AAAGCCCCCA TCAGCAAGCG CTACCCAGTG GTGGAGCTGA CCTGCGCAGT GTTGTCGGCC
TACGTCGCCT GGCATTTCGG CTTCGGCTGG CAGGCGGCTG CGATGCTGGT GTTGAGCTGG
GGTTTGCTGG CGATGAGTCT GATCGATGCC GATCATCAGC TGTTACCTGA CTCTTTGGTG
CTGCCACTGC TGTGGCTGGG CCTGATCGTT AACGCCTTTG GGCTGTTCAC CTCGCTGAGC
GACGCGCTGT GGGGTGCAGT GGCCGGTTAT CTGACGCTGT GGTCGGTGTT CTGGCTTTTC
AAGTTGGTGA CGGGCAAGGA AGGCATGGGC TATGGCGACT TCAAATTGCT GGCCATGCTT
GGCGCGTGGG GTGGCTGGCA GATTCTGCCG TTGACCATTC TGTTGTCGTC GCTGGTGGGT
GCGGTACTTG GGGTGATCAT GATGCGCGTG CGCAGGGTCG AAAGTGGTAC GCCGATCCCC
TTTGGTCCTT ATCTGGCCAT TGCGGGGTGG ATCGCTTTGC TCTGGGGTGG TCAAATAACC
GACTCTTATA TGCAGTTTGC CGGTTTCAGA TGA
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| Protein sequence | MPLLDLLASS PLAFVTTCCL LGLIVGSFLN VVVYRLPKMM ERDWKVQSRE MLGLPAEPDQ
PVFNLILPHS SCPHCAHKIR PWENLPVISY LLLRGKCSQC KAPISKRYPV VELTCAVLSA
YVAWHFGFGW QAAAMLVLSW GLLAMSLIDA DHQLLPDSLV LPLLWLGLIV NAFGLFTSLS
DALWGAVAGY LTLWSVFWLF KLVTGKEGMG YGDFKLLAML GAWGGWQILP LTILLSSLVG
AVLGVIMMRV RRVESGTPIP FGPYLAIAGW IALLWGGQIT DSYMQFAGFR
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