| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0905 |
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| Symbol | hopAH1 |
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| ID | 1182534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 986113 |
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| End bp | 987381 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637392282 |
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| Product | type III effector HopAH1 |
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| Protein accession | NP_790744 |
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| Protein GI | 28868125 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.436525 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTATGA ATACCTCTGT AAGCAACAAC GGCCCTGTGT GGTCCCCCGT CTCATCGGGC
AATCACGCGC CGAGCCCGGA CTTCTCCGGG AAATCATCGA GCAATGCCGT GCACTTTCTT
TCTCCGGAAA GTGCCCATCG TTCGCCAAGC GCGGTGAGTT GGGGGAACAG CACGCCGACA
GCCGCCACCA CAGGGAATGG ACGAGCGGGG GGCGCGGGAC AGAGTGGCCT GGTCGAGGCC
TTGAAGACGC TCATCTATGC GTTGCTAAAA AGCGTAATCG GAAATGCCTC CGCCCATAAT
CGTTCTGAAA GCCAGCCTTC TGCTTCGCCC GGAAACGGAC ACGGACAGGC TTCCACCTGC
AGTGCTGCCA GTCCGACTTC AGGCTCAAAC CCGTCTCAAC AGCCCAGCGA TACCCCGGCG
TTCAATAGCG CGGGGTTGGG TGCTCATGGC GGCGCGAACA CGGTCCCTGA CCGGATTGCG
TCTCCCGACG CAGCGCGAAA AATGGTTGAG GATGTTAAAA ATGCCGGCGG TGGAACACTG
CGCATCCAGA TGACTCACGA CCAGATCAAT GACCCGGCGC AAATGGCCAA GCTCAAGGCG
ATGGTCGATG CCGGTGACAA ACAAGGGGTC AAGGTTCAGT TTACGTTCCG CGACAACGCC
AATGGTGGCG GTGGCAATGT GCTGACGGGC GACAAGCTGA AACAAGCGGC CGACGATGTC
AAAAACGTAG TGTCTGCACT TGGAAAACAC CCAAGCTTTG TACTCGACAC CTTCAATGAA
GGTGGCAAAA GTGCGACTCA GGATTGGGCC AACATGCAGA GCACGTTGAT CAAGTCTGCG
CGTGACGCGG GTTATAAAGG CGACATCGTG GTTGAGGACA GCAATTGGGG CGGTGGTCTG
ACGGCTGGCG GGGAAAGCGG ACTGGTCAAA TACGCCGCTC AATTAAAGGC CGCCAACGGC
AGTAACAACC CCGGCCTGAT CGGCAGTATC CATGAATACG CCAGCGGTGC CGACGCCTCT
TCACGCCTGG GATCGGAGAT CAAGGCGCTG AGCGGCGCAG GCTTCAAACC TCAGATCGGC
GAAGTCGGCA ATGCCAACTG GACCGGGGGC AGTAACTTCG AACAGCGTGA CGGGGCCAAT
CAGGCCGTAA AAGACAACAT GGGCGCGCTG AAAGCCGCCG GTGCCGATGT CCTGCCGTGG
ATGGACCAGT TCCAGGGCGG CAAGATCAAA CACGATGTCG GCTTCTCGAA AGGGGATCAA
TTCTCCTGA
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| Protein sequence | MSMNTSVSNN GPVWSPVSSG NHAPSPDFSG KSSSNAVHFL SPESAHRSPS AVSWGNSTPT
AATTGNGRAG GAGQSGLVEA LKTLIYALLK SVIGNASAHN RSESQPSASP GNGHGQASTC
SAASPTSGSN PSQQPSDTPA FNSAGLGAHG GANTVPDRIA SPDAARKMVE DVKNAGGGTL
RIQMTHDQIN DPAQMAKLKA MVDAGDKQGV KVQFTFRDNA NGGGGNVLTG DKLKQAADDV
KNVVSALGKH PSFVLDTFNE GGKSATQDWA NMQSTLIKSA RDAGYKGDIV VEDSNWGGGL
TAGGESGLVK YAAQLKAANG SNNPGLIGSI HEYASGADAS SRLGSEIKAL SGAGFKPQIG
EVGNANWTGG SNFEQRDGAN QAVKDNMGAL KAAGADVLPW MDQFQGGKIK HDVGFSKGDQ
FS
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