Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0889 |
Symbol | |
ID | 1182518 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 965920 |
End bp | 967194 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 637392265 |
Product | sugar ABC transporter, periplasmic sugar-binding protein |
Protein accession | NP_790728 |
Protein GI | 28868109 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.613044 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAGC TGAAATCTCT TCTTCCTGTG GCGCTGCTCA CCCTGTCTGC GGGGTTCTCT GCGCTGTCCA ACGCAGCAAA TCTGACGATC TCGTGCGGGG CCGTCGGAGC AGAATTGCAA CTGTGCAAAG AGGCTGTTGA TAGCTGGTCG AAACAGACCG GCAATGACGT CCAGGTGGTC TCCACGCCTA ACTCGGCAAC CGAGCGCCTG TCGTTCTACC AGCAAATTCT CAGTGCCAAG TCCACCGACA TCGACATCAT TCAAATCGAC ATGGTGTGGC CCGGCATGCT CGCCAAACAC CTGACGGATC TGCGCGAGCT ACTTCCAGCG GATGCGACAC AAGGCTATTT CCAGGCTCAG GTGGACAACG CCACCGTTGA CGGCCGGCTG GTAACGATGC CCTGGTTCAC CGACTCGGGG CTGCTGTATT ACCGCAAGGA TTTGCTCGAC AAGTACCAAA AGCCGGTTCC CCAGACCTGG GAGGACATGA CGGCCACCGC CAGGCACGTG CAACAGGCCG AACGCGGGGC AGGAAACGCC AATATGTGGG GTTATGTCTT CCAGGGGCGC GCCTATGAGG GCCTGACGTG CAACGCCCTG GAATGGATCA GCAGTCAGCC GGAAGGCGGG GTGATCAACC CGAAAGGGGA CATTGTGGTG AACAGTACCG CCTCGAAAGC CGCGCTGACC CTGGCGAAAA GCTGGGTCGG CGACATTTCT CCACGCGGCG TACTCAACTA TACCGAGGAA GAGGGGCGCG GCGTATTCCA GTCGGGAAAT GCACTGTTCA TGCGCAACTG GCCCTATGTC TGGGCGTTGG TGCAAAGCCC GGACAGCGCG GTAAAAGACA AGGTCGGCAT CGCCCCCCTG CCCCGCGGCG GAGCCAACGG CACCCACGCC TCCACACTCG GAGGCTGGGG CCTGGCAGTT TCGCGGTACA GCGCCAACCC CAGGCTTGCG GCAGAGCTGG TTGCCTACCT GACCAGTGCC CGAGAGCAAA AACATCGTGC ACTGGCAGGC GCTTACAACC CGGTGATCGA GTCGCTTTAT AACGATCCCG AATTGCTCGC AACAATGCCT TACTACAACC AGTTGCACGG CATCCTCGCC AATGGAGTGA TGCGCCCCGC CGCCATCACA GGCAGCGGCT ACCCACGCGT ATCCAACGCG TTCTTTGACC GGGTGCATAG CGTGCTGGCG GGCGATTTGC CGGTCGATCA GGCACTGCTT GAACTGGAAA CCGAACTGAC GCGCATCAAA CGCCGCAACT GGTAA
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Protein sequence | MKQLKSLLPV ALLTLSAGFS ALSNAANLTI SCGAVGAELQ LCKEAVDSWS KQTGNDVQVV STPNSATERL SFYQQILSAK STDIDIIQID MVWPGMLAKH LTDLRELLPA DATQGYFQAQ VDNATVDGRL VTMPWFTDSG LLYYRKDLLD KYQKPVPQTW EDMTATARHV QQAERGAGNA NMWGYVFQGR AYEGLTCNAL EWISSQPEGG VINPKGDIVV NSTASKAALT LAKSWVGDIS PRGVLNYTEE EGRGVFQSGN ALFMRNWPYV WALVQSPDSA VKDKVGIAPL PRGGANGTHA STLGGWGLAV SRYSANPRLA AELVAYLTSA REQKHRALAG AYNPVIESLY NDPELLATMP YYNQLHGILA NGVMRPAAIT GSGYPRVSNA FFDRVHSVLA GDLPVDQALL ELETELTRIK RRNW
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