Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0852 |
Symbol | hopAJ1 |
ID | 1182481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 920451 |
End bp | 921692 |
Gene Length | 1242 bp |
Protein Length | 413 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637392229 |
Product | type III helper protein HopAJ1 |
Protein accession | NP_790692 |
Protein GI | 28868073 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2951] Membrane-bound lytic murein transglycosylase B |
TIGRFAM ID | [TIGR02283] lytic murein transglycosylase |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTTCCA GGGTTATAAC TACATCGCTG GTAGTCATTA TGCTCTCATG TGCATCAGCC GCTCCAGCTT GCTTCTCCGC AGACATGACT CCCAGCGTGT CGAACGAGAG CACGTCGGAG GCGGATTTTC AGCAATGGCT GGCTACTTTC CGCAGCAATG CAACTACTAA GGGCATCGAC ACAGCCACAC TCGATCTTGC TTTCCAAAAC ATCACGCTTG ACCCGACTGT GCACCAGTTG GATATGGCGC AACCAGAGTT CACGACGGCC ATCTGGGATT ATTTGTCTGA ACGTCTGACT CCGAAGAATA TCCAGCAAGG GCAGGAGCTT CTGCAAAAAG AGCCAGTTCT GAACGAGGTA GAGCGTCACT ACGGTGTGGA TGCGAAGATT ATCGCGGCCA TCTGGTGTAT TGAAAGCGGC TACGGTAAGG ATATTGGTAG TCGCGATGTG ATTCGTTCCT TGGCCACGCT TGCTTACAAG GGCCGGCGGA TGGATTACGG GGCTACACAG TTGATGGCCG CCCTTCATAT CGTGCAAAAC AAAGACATCG CCCGTGCGCA ATTGATTGGC TCGTGGGCTG GCGCGATGGG GCAGACGCAA TTCATCCCGA CGACCTATCT CGACTATGCA GTTGATTTTA ACCACGACAA TCGGCGCGAC GTTTGGAGTT CCCGGGCCGA TGCGCTGGCC TCCACTGCCT CTTATTTACA ACGCAGCGCT TGGAACTCGC GCGTCTCTTG GGGACAGGAG GTGCAGTTGC CCGAGAATTT CGATTACGCT CAGGCTGACA TGTCGATCAA GAAGCCCGTT GCCGAATGGC AACGGCTCGG GGTGATGGGA ACGAAGCAAG CGATTCCGGG CGAGCTCGCA CAGGAGCAAG CATCGGTCCT GCTGCCCGCA GGTTATCGCG GGCCAGCATT TATGGTCCTA AGTAATTTCC GTAGCATCCT GCGCTATAAC AACTCCACTG CCTATGCGCT AACGATCGGG CTACTAGCCG ACAGTTATGC TGGCGGGACC GGCGTGTCTC ACCCGTGGCC AACTGATAAT CCTCCCTTGG GCAGCATTGC GCAGGTAACC GATTTGCAGA AACTGCTGAC TGCTAAGGGC TACTCCCTGG GTGCTGCTGA CGGTGTTATA GGGGCGATGA CCCGGGCGGC CATCCGGGCT TACCAGAAGG ATCAGCATTT GCCACCCGAC GGTTACGCCA GCACTGTACT ACTGGAGAGC CTGCGCCGAT AG
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Protein sequence | MRSRVITTSL VVIMLSCASA APACFSADMT PSVSNESTSE ADFQQWLATF RSNATTKGID TATLDLAFQN ITLDPTVHQL DMAQPEFTTA IWDYLSERLT PKNIQQGQEL LQKEPVLNEV ERHYGVDAKI IAAIWCIESG YGKDIGSRDV IRSLATLAYK GRRMDYGATQ LMAALHIVQN KDIARAQLIG SWAGAMGQTQ FIPTTYLDYA VDFNHDNRRD VWSSRADALA STASYLQRSA WNSRVSWGQE VQLPENFDYA QADMSIKKPV AEWQRLGVMG TKQAIPGELA QEQASVLLPA GYRGPAFMVL SNFRSILRYN NSTAYALTIG LLADSYAGGT GVSHPWPTDN PPLGSIAQVT DLQKLLTAKG YSLGAADGVI GAMTRAAIRA YQKDQHLPPD GYASTVLLES LRR
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