| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0835 |
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| Symbol | |
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| ID | 1182464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 906604 |
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| End bp | 907278 |
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| Gene Length | 675 bp |
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| Protein Length | 224 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637392217 |
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| Product | ribD C-terminal domain protein |
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| Protein accession | NP_790680 |
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| Protein GI | 28868061 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAAGTTA CTGTATTCAG TCAGATATCA ATTGATGGCA AGTTGACGAT GGGCAAAGGC
GCATCCAGCA AGCCGTTGTT TCAGAACTTT GATGATGATG ACATGCGTTT TATTCATAAG
TTCCGCGGCG AAGTCGACGC AATCATGGTA GGGCGCAATA CAATTGTTAC TGACGATCCA
CAATTGACCA ATCGCTATGA GTCGGGTCGT AACCCAATAC GTATCATTCC CACCACCTCC
TTAGATCTGC CTACTTCCGC CAGTATTTTC AAATCACCAG AGAAAACTAT TATCGCAACT
AGCGAACAGG CTCGTGATCA TGAAATGGTC AAACATATCC GTGCTTGTGG AAAGGAGGTG
CTCTTTGCCG GTGCAAAGCA TGTCGACTTT ACACGACTTT TCCCTATGCT GGAGGCGCGC
GGAATAAACC ACATCATGGT TGAGGGCGGT GGCCACCTGA ACTGGCAGGT ATTCAATCTC
GATCTGGTAG ATGAAATTAT ACTCATGCAG GTGCCTATCA TCATAGGTGG TGCGGCAACT
GCAACGCTTG CTGACGGGGT GGGGTATCGG GATATCAACA TGGCCAATTC GTTTACGCTG
CATGCTTTAG AAGCACGCCC CCATTACAAT CTCATGCACT TCAAGCGCGA ATCGAACAAT
CGGAGCCCGT ACTGA
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| Protein sequence | MKVTVFSQIS IDGKLTMGKG ASSKPLFQNF DDDDMRFIHK FRGEVDAIMV GRNTIVTDDP
QLTNRYESGR NPIRIIPTTS LDLPTSASIF KSPEKTIIAT SEQARDHEMV KHIRACGKEV
LFAGAKHVDF TRLFPMLEAR GINHIMVEGG GHLNWQVFNL DLVDEIILMQ VPIIIGGAAT
ATLADGVGYR DINMANSFTL HALEARPHYN LMHFKRESNN RSPY
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