| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0815 |
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| Symbol | |
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| ID | 1182440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 878088 |
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| End bp | 881291 |
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| Gene Length | 3204 bp |
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| Protein Length | 1067 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637392195 |
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| Product | type IV pilus-associated protein, putative |
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| Protein accession | NP_790662 |
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| Protein GI | 28868043 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAACTG CTAAGGCGCT TCGTGGTGGC TTGAAATACC TCTATGGCGC TTTGCTGGCG
CTGTATCTGG CGAGCCCGGT TTATGCCTTC ACGCCGGCGC AAGTCCCTTT GTTGACCTCC
CCGGCAGTGC CGCCCAATCT GATGTTGCTC GTGGACAACT CGGGCAGTAT GTACAACATC
ATCTGGGATT CGGGGTTTGA CGCGTCGGTC AATCGTCCGG ACATCAGTTA CTTCTCAACG
CAGTGCTTAA GCGGTTTGAT AACAGTAGTT TGCCCATTTT TGAGCACCCT GTCGGGTGAT
GAAACGCTCT CGCTGGGCGA TATCAATGGT ACCAATATCC TCACGTTGCA ACTGAGGTGT
CCGTTTGGGG GGCGTCCGGT TTTTCGTAAT GACATTCAGT ACTGTCTGAA CCTGCCCGAT
CCGGCCGGTA ACGGGCTGAC GCGTTATACG GCTGATTACC TGTCCTATCT TATTGATCTG
GTCAGCCCTG GCTTTTTTGG CGTTCGCAAC TACACCAATG GCGTGATCCC GAACGACTTC
AGAATGAATG TCGCGAAAAC CGTAGCGACC AACCTGGTAA CCAACAATAC GACGCTCAGA
ATCGGGCTCG CGTCCTTCAA CCAACCGACC AACAGTGACC TTGGCCCAGG AGGCAAGATT
GCCAGGCTTG TCACTGACCT GTCTCCGGTA GCGATCAGTA CCTTTCAACC TTCCGGCGTG
TCTCAACAGC AGGCCACTCA AAATATCACT GACCTCAAGA CCGCTATCAC CAACCTGACG
CCGTCAGCCA ACACGCCACT GGCTGAAACC TATTACGAGA TCACGCGGTA TTTTCGCGGT
ATGTCACCGT TCTATCAAAG CGGCTCCAAC TACGTGAGTC CGATTCAATA CCGCTGCCAG
AAAAACTACG GTGTTGTGGT TACCGATGGC CTGCCGACCT ATGACCGGAC GTTTCCAGCC
AACGACCCTG ACGATGTTCT GGACACCACG CGCTCATTAC CCAACTGGGA TTTAAATGCA
GCCAATGACG GCGACAACCT GTCCGGTGAT GGTGAAGGGG ATACACTTTA TCTGGACGAC
CTGGCCAAAT TTGCCTATGA CATCGACCTG CGGCGGGATG CGGTGACGAC TGGCGGCGAC
CTGACCGGAA AAAGCTGGGA TACCGCAGGC TTTGCGAAGC AGAACATGAG CACTTACACC
ATCGGGTTCA CCGCATCTAA CCAGATGCTG AACGATGCTG CCGACGATAC CCATGGCCAT
GGCAAATACT TTCAGGCCAA TGACAGCACG GGGCTGACTT CAGCCTTGAA TCTGGCGTTG
AGCGATATTT ACGCCAAAGT CGGCTCTGGC GCAGGTGGGG CAGCGAACTC ATCAACGCTC
CAGGCGGGTA CCCAGTTTTA CCAGACGCTC TATGACCCGA CCGATTGGCA CGGCACCATC
AGAGCCTTCA ATCTGGATCA GACCACGGGA GCATTGAGTG CCCCCGTATG GACTACCGAC
ACTGCCATTG TCAGTGGATC AACGGCACCG GTTTTTGAAT CCTGGAACAC GGTTTCCACT
TCGGGAAGGA TCGCTCTGGA TTACAACAAC TTCAGCCCTG CTCAGCAGGC GGCACTGAAT
GCAACATTGC CAGGCAATGC CAACGGTATA GAGCTTATTA ACTGGGCCAA AGGCACTGCC
AACGCGAAGT TTCGGCCACG CACCCGGCTG TTGGGCGATA TCGTCAACTC TTCGCTAGGT
ACTGCGTTCC CTAAGCAAAA GACCGCCGCC GACCTGACGG GTGATACCAC CTACACCACC
TATCTGGCCA TCAAGGCAAA CAGCATGAGC TCCAGCATTC TGGCCAATGC CAATGACGGC
TTTTTCAACG TCATCAATTC TGGCGATGGT TCAAGGCGCT ATGCGTATAT GCCTTCGACG
GCTCTGACGT CGCTGGCGAC CATCGCATCA ACCACCTATG GATCTGGCGT TCACAAGTTC
ACCGTCGATG GCCAGATCGC AGTGTTCGAT ACACAGCTTG CCGCGGGTTC CTCATGGCGC
ACCGTTGCCT ATGGTGGTAC GGGGGCGGGC GGCAAAGCGT TCTTCGCAAT CAAGTTATTC
GAGGGTGTCA GCAACACTGT CAGCGCATTA TGGGAGGTCA AGGCCCCCGA CACTTCCGAC
ACCAACAATA AATTCAACAA TCTTGGCTAT GCCTATGCAA GGCCTGATGT TGCCCGGATG
GCGGATGGCA CCGGGATTGT GGTGGTCGGC AACGGTTACG GCAGCTTCAC CGGCAGAGCT
TCGCTCTATG TATTGAATGC CAACACCGGG GCGTTCATTG CCGAGATTCA GACACCGATC
CTTAATAGCG AAACCGATAA CGGGCTTTCT TCGGTCAAAT TGCGCGTCAA CTCTCAGAAT
GTGGTTCAGG CTGCCTATGC GGGCGACCTG AAGGGGCGGT TGTGGAAGTT CGACTTGAGT
GGCGCAACCG CTGCCAGCTG GAAAATAGCG TTTGGCGGCG CGCCTTTGTT CACTGCACCG
CGAGGCGCCA ATCAGCCAAT AACGGTTCAG CCATTCGTGC TTGATCATCC GCTCAACGGC
AAGATCGTGT ATTTCGGCAC CGGCAAGTTC CTCGAAGTTG CAGACAAGCA GACCTCCGCT
CTTCAGGATT TCTACGCGAT ATGGGATGCG GACTCCGGAG CGGGCGGCAC GGTCGAGGCG
AACCTGCAAG CGCAGGCGGT CAATGGCAGT GTTGTCAGTA ACGGAACCAC CTATTTCACG
TCGACAACCA ACGATGTGGA TTGGTCAGTC AAGAAGGGCT GGTACATGCC GCTTTCCGCC
GTAGCGCCCT ATCTGGGGGA GCGAATCATT TACCCCGCGC AGACCAGTCG AGGCCGGATT
ATCTTCTCGA CAGCATCCGT GAACTCCGCT GACCCCTGTG AAAGCACAGG CACCGGGCGG
GTATTTGAAC TCAATGCTGC CACCGGCAGC ATGCTCAACT ACCAGGTGCT TGATACCAAC
GGCGATAACA GCATCAACAA TTCAGACCTG TTTGCCGCCG GGATCGGGTA CACAGGTATC
CCCGTCGTAT CCGCTATCGT TTCGGGTACC GGGGACGGGA ATGAGGTGAA GATCATTAAT
AACTCCACGG GTAACACGCC TGATGTTCTG AAGGAAAAGG GCGGGAGCGG CAACCAGCGC
ATCATGTGGC GACAAATCCA ATAG
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| Protein sequence | MPTAKALRGG LKYLYGALLA LYLASPVYAF TPAQVPLLTS PAVPPNLMLL VDNSGSMYNI
IWDSGFDASV NRPDISYFST QCLSGLITVV CPFLSTLSGD ETLSLGDING TNILTLQLRC
PFGGRPVFRN DIQYCLNLPD PAGNGLTRYT ADYLSYLIDL VSPGFFGVRN YTNGVIPNDF
RMNVAKTVAT NLVTNNTTLR IGLASFNQPT NSDLGPGGKI ARLVTDLSPV AISTFQPSGV
SQQQATQNIT DLKTAITNLT PSANTPLAET YYEITRYFRG MSPFYQSGSN YVSPIQYRCQ
KNYGVVVTDG LPTYDRTFPA NDPDDVLDTT RSLPNWDLNA ANDGDNLSGD GEGDTLYLDD
LAKFAYDIDL RRDAVTTGGD LTGKSWDTAG FAKQNMSTYT IGFTASNQML NDAADDTHGH
GKYFQANDST GLTSALNLAL SDIYAKVGSG AGGAANSSTL QAGTQFYQTL YDPTDWHGTI
RAFNLDQTTG ALSAPVWTTD TAIVSGSTAP VFESWNTVST SGRIALDYNN FSPAQQAALN
ATLPGNANGI ELINWAKGTA NAKFRPRTRL LGDIVNSSLG TAFPKQKTAA DLTGDTTYTT
YLAIKANSMS SSILANANDG FFNVINSGDG SRRYAYMPST ALTSLATIAS TTYGSGVHKF
TVDGQIAVFD TQLAAGSSWR TVAYGGTGAG GKAFFAIKLF EGVSNTVSAL WEVKAPDTSD
TNNKFNNLGY AYARPDVARM ADGTGIVVVG NGYGSFTGRA SLYVLNANTG AFIAEIQTPI
LNSETDNGLS SVKLRVNSQN VVQAAYAGDL KGRLWKFDLS GATAASWKIA FGGAPLFTAP
RGANQPITVQ PFVLDHPLNG KIVYFGTGKF LEVADKQTSA LQDFYAIWDA DSGAGGTVEA
NLQAQAVNGS VVSNGTTYFT STTNDVDWSV KKGWYMPLSA VAPYLGERII YPAQTSRGRI
IFSTASVNSA DPCESTGTGR VFELNAATGS MLNYQVLDTN GDNSINNSDL FAAGIGYTGI
PVVSAIVSGT GDGNEVKIIN NSTGNTPDVL KEKGGSGNQR IMWRQIQ
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