| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0810 |
|---|
| Symbol | |
|---|
| ID | 1182435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 875259 |
|---|
| End bp | 875759 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637392190 |
|---|
| Product | type IV pilus biogenesis protein |
|---|
| Protein accession | NP_790657 |
|---|
| Protein GI | 28868038 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCATG CAGGGTTCAC ACTGATCGAA TTATTGATCG TCGTTGCACT GGTGGCCATT
CTGGCCAACG TCGCAACACC TTCTTTCAAG CAACTGATCG ACTCCAATCG GGGGCTCGTC
GCCGCTCAGG AACTGGCCAG CGGTATTCGT TCGGCAAGAG TCGCCGCTAT TACGCGCAAT
CAGATTGTGA CGATTCACGC CATTGAAGAG GACTGGAGCA ACGGCTGGCG GATCATACTC
GACCTGGACG GCAAAGGCCC CGACGAAAAA GATACGTTGC TGGTAGAGCG CGCCAATGGC
GGCACGCCTC GGGTGGTCGG CAACCGTAAA GTGACGGAGC GACTGAGCTT CAATGGCTTG
GGCAACCTGC GAAACAGAAC CAATGGCACG CTGCATGTGT GTCTCGACGA CCAGCCGGCC
AGCCACTATC GCGTGATAGT GGCGCCGACT GGACGGGTCA GGATTGAGGA CACCAAGCGT
GACGTTGCGT TGTGCAGATA G
|
|---|
| Protein sequence | MKHAGFTLIE LLIVVALVAI LANVATPSFK QLIDSNRGLV AAQELASGIR SARVAAITRN
QIVTIHAIEE DWSNGWRIIL DLDGKGPDEK DTLLVERANG GTPRVVGNRK VTERLSFNGL
GNLRNRTNGT LHVCLDDQPA SHYRVIVAPT GRVRIEDTKR DVALCR
|
|---|
| |