| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0767 |
|---|
| Symbol | |
|---|
| ID | 1182387 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 815889 |
|---|
| End bp | 816815 |
|---|
| Gene Length | 927 bp |
|---|
| Protein Length | 308 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637392142 |
|---|
| Product | ABC transporter, permease protein |
|---|
| Protein accession | NP_790614 |
|---|
| Protein GI | 28867995 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1079] Uncharacterized ABC-type transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCG ACCTGCTGAG CAATATTTTC TATGCCATGG TCCGTTGTGG CACGCCGTTG
CTGCTCGTCG CACTGGGCGA ACTCATTTGC GAAAAAAGCG GCGTCATCAA TCTGGGCCAG
GAAGGCATGA TGCTGTTCGG GGCGGTGATC GGTTTCATCG TTGCGCTGAG CACCGGCAAT
CTGTGGCTGG GCGTCTTGCT GGCGATGCTG GCGGGCATGT TGCTCTCGGC CTTGTTCGCG
CTGGTGGCGC TGGTATTCAA CGCCAATCAG GTCGCGACCG GTCTGGCGCT GACTATTTTT
GGTGTCGGGC TTTCAAGCTT CGTGGGTGCC GCCTGGGTTG GCAAACCGCT CAGTGGTTTC
GAGCCGGTGG CCATCCCCTT CCTCAGCGAT ATCCCGCTGA TCGGCCGCAT GCTGTTTGCC
CAGGACCTGC TGGTCTACCT GTCTTTTGCA CTGTTCGCGC TGGTGGCCTG GGCGCTGCTG
AAAAGCCGCG TTGGGCTGAT CATCCAGGCG GTCGGCGAAA ACCCGGACGC CGCCAGTGCC
ATGGGCTTGC CGGTATTGCG GGTGCGAACC CTGGCGGTGT TGTTCGGCGG TGCAATGGCC
GGGCTGGCCG GGGCTTACCT GTCGCTGGCC TATACACCGA TGTGGGCGGA AAACATGAGC
GCTGGACGTG GCTGGATCGC CCTGGCGCTG GTGGTATTTG CCAGCTGGCG AGTCTGGCGC
CTGCTGCTCG GCGCCTACCT GTTCGGCCTC GCCAGCATCC TGCACCTGGT GGCACAAGGC
ATCGGCCTGG CGATCCCGTC CAACCTGCTG GCGATGCTGC CTTACGTGGC CACCATCATC
GTCCTCGTCC TGCTCTCCCG CGACGCCCTG CGCACCCGGC TGTACGCGCC GGTTTCGCTG
GGCCAGCCGT GGCGGGCGGG GCATTGA
|
|---|
| Protein sequence | MDIDLLSNIF YAMVRCGTPL LLVALGELIC EKSGVINLGQ EGMMLFGAVI GFIVALSTGN
LWLGVLLAML AGMLLSALFA LVALVFNANQ VATGLALTIF GVGLSSFVGA AWVGKPLSGF
EPVAIPFLSD IPLIGRMLFA QDLLVYLSFA LFALVAWALL KSRVGLIIQA VGENPDAASA
MGLPVLRVRT LAVLFGGAMA GLAGAYLSLA YTPMWAENMS AGRGWIALAL VVFASWRVWR
LLLGAYLFGL ASILHLVAQG IGLAIPSNLL AMLPYVATII VLVLLSRDAL RTRLYAPVSL
GQPWRAGH
|
|---|
| |