| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0724 |
|---|
| Symbol | |
|---|
| ID | 1182344 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 773250 |
|---|
| End bp | 773897 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637392099 |
|---|
| Product | DedA family protein |
|---|
| Protein accession | NP_790571 |
|---|
| Protein GI | 28867952 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0586] Uncharacterized membrane-associated protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTCA ACCCGCTCGA CCTTATCCTG CATCTCGACG TCTATCTCGA CCTGCTGGTG
ACCAACTACG GCACATGGGT CTACGCGATC CTGTTTCTGG TGATTTTCTG CGAGACCGGG
CTGGTGATCA TGCCTTTCCT GCCGGGCGAT TCGCTGTTGT TCATCGCCGG GGCCGTGGCT
GCCGGTGGCG GTATGGACCC GGTATTGCTG GCCGGGCTGC TGATGCTGGC GGCAATTCTC
GGTGACAGCA CCAACTACGT CATCGGTCGT ACCGCCGGGG AAAAACTGTT CAGCAACCCC
AACTCGCGCA TCTTCCGCCG CGACTACCTG CTGCGCACCC AGGATTTCTA CCAGCGCCAC
GGCGGCAAGA CCGTCACGCT GGCGCGCTTT CTGCCGATCA TCCGCACATT CGCGCCGTTC
GTGGCCGGTG TCGGCCGAAT GTCCTATCCG CGCTTCGTGG GGTTCAGCGT GCTGGGCTCG
GTGCTGTGGG TCGGCAGTCT GGTCGCGCTG GGCTTCTTCT TCGGCAACGT GCCGTTCATC
AAGCAAAACC TGACCCTGCT GGTGCTCGCC ATCATCCTGA TTTCGCTGGT GCCGATGGTC
ATTGGCGTGG TGCGCAGCCG CAGCGCCCCG CCGGTAGATG CACGCTAA
|
|---|
| Protein sequence | MEFNPLDLIL HLDVYLDLLV TNYGTWVYAI LFLVIFCETG LVIMPFLPGD SLLFIAGAVA
AGGGMDPVLL AGLLMLAAIL GDSTNYVIGR TAGEKLFSNP NSRIFRRDYL LRTQDFYQRH
GGKTVTLARF LPIIRTFAPF VAGVGRMSYP RFVGFSVLGS VLWVGSLVAL GFFFGNVPFI
KQNLTLLVLA IILISLVPMV IGVVRSRSAP PVDAR
|
|---|
| |