Gene PSPTO_0690 details

Gene Information

• Locus tag: PSPTO_0690
• Symbol: ribD
• ID: 1182310
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 743981
• End bp: 745126
• Gene Length: 1146 bp
• Protein Length: 381 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 637392065
• Product: riboflavin biosynthesis protein RibD
• Protein accession: NP_790537
• Protein GI: 28867918
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0117] Pyrimidine deaminase; [COG1985] Pyrimidine reductase, riboflavin biosynthesis
• TIGRFAM ID: [TIGR00227] riboflavin-specific deaminase C-terminal domain; [TIGR00326] riboflavin biosynthesis protein RibD

Plasmid Coverage information

• Num covering plasmid clones: 18
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTGCAG TGTTGACTGA ACAGGCAGCC CTCGACGTTC ATTACATGGC CCATGCGCTG 
GAACTGGCGC GCAAGGGCCT TTATTCGACA CACCCCAACC CGCGAGTCGG TTGCGTGATC 
GTGCGTGACG GCCAGATTGT CGGTCAGGGC TGGCATGCGC GGGCTGGCGA GCCGCACGCC 
GAAGTGCACG CGCTGCGCGA GGCCGGGGAG CTTGCCCGGG GCGCAACCGC CTACGTCACA 
CTTGAACCGT GCAGCCATCA GGGACGCACC CCGCCGTGCG CCGATGCACT GATCAGCGCC 
GGGCTGGCGC GGGTCGTTGC GGCAATGCAG GACCCCAATC CGCAAGTGGC CGGCAGCGGG 
CTTTTGCGCC TGATGACTGC CGGTATCAGC GTTCAGTGCG GCGTACTGGA AGGCGAGGCG 
CGAGCGCTGA ACAAAGGTTT TATCAAGCGC ATGGAAACCG GACGGCCCTA TGTGCGGGTC 
AAGATGGCCA TGAGCCTGGA TGGCAGAACG GCCATGGCCA GCGGTGAAAG CCAGTGGATC 
ACCGGCCCCG AGGCGCGTTC TGCGGTTCAG CGCCTGCGCG CCCAATCGAG CGTGGTGCTG 
ACCGGTGCCG ATACGGTGCT GGCCGACAAG GCACGCCTGA CCGTGCGCCC TGACGAGCTG 
GGGCTCAATG CCGAACTCAC TGCGCTGGCG GCTGCGTGTC CGCCCCTGCG CGTATTGATC 
GACGGACGGC TGCGCGTGCC ATTGGATACG CCGTTCTTTC AGGCGGGCAG TGCGCTGGTC 
GTGACCTGCG CCGCGGCGTC GGCGCGGGGT CGTTATCAGG AAGACGGTCA CGAGATGCTG 
GCGCTGGCCG ACAGCGCCGG TCATGTTGAC CTGCGCAGGT TGATGGGCGA ACTGGGCGCG 
CGGGGCGTCA ACGAGGTGCT GGTCGAAGCC GGTCCGCGTC TGGCCGGTGC CTTCACGCGT 
CTCGGGCTGG TCGACGAATT TCAGCTATTC ATTGCAGGCA AGTTTCTCGG TTCGTCGGCC 
CGGCCGCTGC TCGATCTGCC CCTGGCGCAG ATGAGTGAAG CGCTGGAGCT GAACATCATT 
GAAATGCGAG CCGTCGGCAA TGACTGGCGA GTCATTGCTC TCCCTGTCAG TGCACCCGGC 
GTATAA 

 

Protein sequence

MSAVLTEQAA LDVHYMAHAL ELARKGLYST HPNPRVGCVI VRDGQIVGQG WHARAGEPHA 
EVHALREAGE LARGATAYVT LEPCSHQGRT PPCADALISA GLARVVAAMQ DPNPQVAGSG 
LLRLMTAGIS VQCGVLEGEA RALNKGFIKR METGRPYVRV KMAMSLDGRT AMASGESQWI 
TGPEARSAVQ RLRAQSSVVL TGADTVLADK ARLTVRPDEL GLNAELTALA AACPPLRVLI 
DGRLRVPLDT PFFQAGSALV VTCAAASARG RYQEDGHEML ALADSAGHVD LRRLMGELGA 
RGVNEVLVEA GPRLAGAFTR LGLVDEFQLF IAGKFLGSSA RPLLDLPLAQ MSEALELNII 
EMRAVGNDWR VIALPVSAPG V