Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0673 |
Symbol | exbB-2 |
ID | 1182293 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 728838 |
End bp | 729530 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637392048 |
Product | TonB system transport protein ExbB |
Protein accession | NP_790520 |
Protein GI | 28867901 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0811] Biopolymer transport proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.649257 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACACTG CTTATTCCGT ACTCATCACT CAATCTTCGA TGACGTTGCT GGTGATTTTC TCGCTGGTGA CCTGGGCGCT GCTGCTCGGC AAAACTCTTC AGCACTGGCG ACTGAGCCGT CAGAACCGGC GCTACTCGAC GCAATTCTGG GCCGCCCGCG ACCTGAAAAA TGCGCTGCAC CTGCCGCACA GTGAAGGCAG CCTGGCACGC CTGACCGACG CAGGCGCGCA GGCCCTCGCA ACGCCGCACG ACTCGCCGGA CCTGGGCCAC AGCTGGAATC GTCAGGACCT GCTGGAGCGC AGCCTGCGCC AGCAGATCCA CAAGGAGCGT CGTCGCCTGG AGAGCGGCAT GATCCTGCTG GCCTCGATCG GCAGCACAGC GCCTTTTATC GGTCTGTTCG GCACCGTCTT CGGAATCATT CACGCACTCA CAGCGATCAG CCAGGCCAAG TCAGCGAGCA TTGCGGTGGT TGCAGGGCCC ATCGGTGAAG CCTTGGTGGC GACCGGCGTC GGTATCGCCG TCGCCGTGCC CGCCGTGCTG GCCTACAACT TTTTCGGACG ACGCATGAAG CTGGTGATCG CCGACCTGGA GGAGTTCGCC GTGGACTTTC TCAACCTCTC GCAGCGCAAC GCCTTCCGGT TGCAACCCGA GGGTCGCGAC AAGGCAGCAC CTAACCTGAA AGGAGTGAGC TGA
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Protein sequence | MNTAYSVLIT QSSMTLLVIF SLVTWALLLG KTLQHWRLSR QNRRYSTQFW AARDLKNALH LPHSEGSLAR LTDAGAQALA TPHDSPDLGH SWNRQDLLER SLRQQIHKER RRLESGMILL ASIGSTAPFI GLFGTVFGII HALTAISQAK SASIAVVAGP IGEALVATGV GIAVAVPAVL AYNFFGRRMK LVIADLEEFA VDFLNLSQRN AFRLQPEGRD KAAPNLKGVS
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