| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0667 |
|---|
| Symbol | |
|---|
| ID | 1182287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 720816 |
|---|
| End bp | 721586 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637392042 |
|---|
| Product | oxidoreductase, short-chain dehydrogenase/reductase family |
|---|
| Protein accession | NP_790514 |
|---|
| Protein GI | 28867895 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTTGA TACCCGAACT GAACAGCAAA GCTCACGTGC TGATAGGCGG GGCCAGCCGA
GGCATAGGCT TGGCACTGTG TGCGGCTTTG CTCGCGCGCG ATGATGTGGC TCTGGTATGG
GCGGTAGCGC GAAAAGCCAG CAGCTCTATA GAACTGACAA AGCTTGCAGA ACAGTATGGC
CAACGCCTGA AACGAGTCGA CTGCGATGCG TGCAATGAGC AAGCACTCGA AGCACTCGTG
AGCGAGACGC TTGAGGGGTC CGATCATCTG CATCTCGTTA TCAGTACGTT AGGCATTCTC
CATCAGGACG GCGCAAAAGC AGAAAAGGGC CTGGCACACG TGACGCTTGC GGGCCTGCAA
GCGAGCTTCG CGACCAACAC CTTTGCACCG ATCCTGCTGC TTAAACACCT ACTCCCGCTA
TTGCGCAAAC ACCCTTCGAC CTTCGCGGCG CTCTCCGCGA GGGTTGGCTC TATCGGTGAT
AATCGATTGG GTGGCTGGTA CAGCTACAGA GCCAGCAAAG CGGCGCTCAA CCAGTTGCTG
CACACCGCCA GTATCGAATT GAAACGCCTG AACCCTGCCT CTACTGTCCT GGCAATACAC
CCAGGCACGA CTGATACGGA ACTGTCCCGG CCATTCCAGG CGAACGTGCC TGATGGACAA
CTATTCGAAC CGGCTTTCTC CGCGGATCGC ATTATTGCGC TGATAGAAGT ACATGGTCCG
GCCGACAGCG GGACCTTCTG GGACTGGAAC GACAAACCCA TTGTCTGGTG A
|
|---|
| Protein sequence | MSLIPELNSK AHVLIGGASR GIGLALCAAL LARDDVALVW AVARKASSSI ELTKLAEQYG
QRLKRVDCDA CNEQALEALV SETLEGSDHL HLVISTLGIL HQDGAKAEKG LAHVTLAGLQ
ASFATNTFAP ILLLKHLLPL LRKHPSTFAA LSARVGSIGD NRLGGWYSYR ASKAALNQLL
HTASIELKRL NPASTVLAIH PGTTDTELSR PFQANVPDGQ LFEPAFSADR IIALIEVHGP
ADSGTFWDWN DKPIVW
|
|---|
| |