Gene PSPTO_0651 details

Gene Information

• Locus tag: PSPTO_0651
• Symbol: rpoA
• ID: 1182271
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 703774
• End bp: 704775
• Gene Length: 1002 bp
• Protein Length: 333 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637392026
• Product: DNA-directed RNA polymerase, alpha subunit
• Protein accession: NP_790498
• Protein GI: 28867879
• COG category: [K] Transcription
• COG ID: [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit
• TIGRFAM ID: [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGATTT CGGTAAATGA GTTCCTGACA CCCCGCCACA TTGATGTGCA GGTTGTCAGT 
CCAACCCGCG CCAAAATCAC TCTCGAGCCT CTCGAGCGTG GTTTCGGCCA TACCCTGGGC 
AACGCGCTTC GCCGCATTTT GTTGTCCTCC ATGCCCGGCT GTGCAGTAGT CGAGGCCGAG 
ATTGACGGTG TACTCCATGA GTACAGCGCC ATCGAAGGTG TACAGGAAGA CGTCATTGAA 
ATCCTGTTGA ACCTTAAAGG TCTGGCTATC AAGCTGCACG GTCGAGACGA AGTTACGCTG 
ACCTTGTCGA AGAAGGGTTC GGGGGTGGTT ACCGCTGCCG ATATTCAGCT GGATCATGAT 
GTCGAGATCG TTAACCCCGA TCACGTAATC GCTAACCTGG CGTCTAACGG CGTCTTGAAC 
ATGAAGCTCA CCGTAGCTCG TGGTCGTGGT TATGAGCCGG CAGACTCGCG TCAAAGCGAT 
GAAGACGAAA GCCGCAGCAT TGGTCGCTTG CAGCTTGACT CTTCGTTCAG CCCGGTCCGC 
CGTATCGCAT ACGTGGTGGA AAACGCCCGT GTCGAGCAGC GCACTAACCT GGACAAGCTG 
GTTATTGATC TGGAAACCAA CGGTACTCTG GACCCGGAAG AGGCTATCCG TCGCGCTGCA 
ACCATCCTGC AACAGCAGTT GGCTGCGTTC GTGGACCTCA AAGGCGACAG CGAACCAGTG 
GTAATCGAAC AGGAAGACGA GATCGATCCG ATCCTGCTTC GTCCGGTTGA CGATTTGGAA 
CTGACCGTGC GTTCGGCCAA CTGCCTTAAG GCGGAGAACA TCTACTACAT CGGTGACCTG 
ATTCAGCGCA CCGAAGTAGA GTTGTTGAAG ACTCCGAACC TGGGCAAGAA ATCCTTGACC 
GAGATCAAGG ACGTTCTGGC TTCGCGTGGT CTGTCCCTCG GCATGCGCCT CGACAACTGG 
CCGCCGGCAA GTCTTAAGAA GGACGACAAG GCTACGGCCT GA 

 

Protein sequence

MQISVNEFLT PRHIDVQVVS PTRAKITLEP LERGFGHTLG NALRRILLSS MPGCAVVEAE 
IDGVLHEYSA IEGVQEDVIE ILLNLKGLAI KLHGRDEVTL TLSKKGSGVV TAADIQLDHD 
VEIVNPDHVI ANLASNGVLN MKLTVARGRG YEPADSRQSD EDESRSIGRL QLDSSFSPVR 
RIAYVVENAR VEQRTNLDKL VIDLETNGTL DPEEAIRRAA TILQQQLAAF VDLKGDSEPV 
VIEQEDEIDP ILLRPVDDLE LTVRSANCLK AENIYYIGDL IQRTEVELLK TPNLGKKSLT 
EIKDVLASRG LSLGMRLDNW PPASLKKDDK ATA