Gene PSPTO_0650 details

Gene Information

• Locus tag: PSPTO_0650
• Symbol: rpsD
• ID: 1182270
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 703131
• End bp: 703751
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 637392025
• Product: ribosomal protein S4
• Protein accession: NP_790497
• Protein GI: 28867878
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.955539
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTCGTT ACATTGGTCC AAAATGCAAA CTTGCTCGTC GTGAAGGCAC CGATCTCTTT 
TTGAAGAGCG GCGTTCGCGC TATCGAATCC AAGTGCAACA TCGAAGCAGC TCCAGGCATC 
CACGGCCAAC GCCGCGGTCG CCAGTCCGAT TACGGTACCC AGCTGCGTGA AAAGCAAAAA 
GTCCGTCGTA TCTACGGCGT TCTCGAGCGT CAGTTCAGCG GCTACTACAA AGAAGCCGCC 
GGCAAGAAAG GTGCAACAGG CGAGAACCTG CTGCAACTGC TCGAATGCCG TCTGGACAAC 
GTTGTATACC GCATGGGCTT CGGCTCGACG CGTGCCGAAT CCCGTCAATT GGTTTCGCAC 
AAGTCGGTTA GCGTAAACGG CAAAACCGTT AACGTTCCTT CTTATCAGGT TCGTGCTGGC 
GACGTTGTTG CTATCCGCGA AAAGGCTAAG AATCAGCTGC GTATTGTCCA GGCTCTCGAT 
CTGTGTGCCC AACGTGGCCG CGTAGAATGG GTAGAAGTAG ACACTGAGAA GAAATCGGGC 
GTTTTCAAGA ACGTACCAGC TCGCAGTGAT CTATCCGCCG ACATCAACGA AAGCCTGATT 
GTCGAGCTCT ACTCCAAGTA A 

 

Protein sequence

MARYIGPKCK LARREGTDLF LKSGVRAIES KCNIEAAPGI HGQRRGRQSD YGTQLREKQK 
VRRIYGVLER QFSGYYKEAA GKKGATGENL LQLLECRLDN VVYRMGFGST RAESRQLVSH 
KSVSVNGKTV NVPSYQVRAG DVVAIREKAK NQLRIVQALD LCAQRGRVEW VEVDTEKKSG 
VFKNVPARSD LSADINESLI VELYSK