| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0646 |
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| Symbol | secY |
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| ID | 1182266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 700726 |
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| End bp | 702060 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637392021 |
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| Product | preprotein translocase, SecY subunit |
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| Protein accession | NP_790493 |
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| Protein GI | 28867874 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0201] Preprotein translocase subunit SecY |
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| TIGRFAM ID | [TIGR00967] preprotein translocase, SecY subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.617938 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTAAGC AAGGTGCTCT CTCTGCGCTC GGCAAAGGCG GTATGTCTGA ACTCTGGGCT
CGTCTGCGTT TTCTGTTCCT GGCGATTATC GTCTACCGAA TAGGCGCACA CATCCCGGTT
CCAGGTATCA ACCCGGACCG ACTCGCAGAA CTGTTTCGAC AGAATGAGGG GACCATTCTT
AGCTTGTTCA ACATGTTTTC CGGCGGTGCG CTGGAGCGGA TGAGCATATT TGCACTGGGG
ATCATGCCGT ACATTTCGGC GTCGATCATC ATGCAGTTGA TGACAGCCGT CAGCCCACAG
CTGGAGCAGT TGAAGAAGGA AGGTGAGGCT GGCCGTCGCA AGATAAGCCA GTACACCCGC
TACGGCACTG TGGTTCTGGC TCTGGTTCAA GCTATCGGCA TGTCCGTTGG CCTGGCGAGT
CAGGGCGTCG CGTTTTCTGG GGACCTTGGT TTCCACTTTG TGGCCGTAAC TACCTTCGTG
GCAGGTGCGA TGTTCATGAT GTGGCTAGGC GAGCAGATCA CCGAGCGCGG TGTCGGCAAC
GGTATCTCGA TGTTGATCTT CGCAGGTATC GTGGCTGGTC TTCCGAGAGC GATAGGGCAG
TCTTTCGAGT CTGCCCGTCA GGGTGATATC AACATTTTCG CCCTGGTTGC AATCGGTTTG
CTGGCAGTAG CGATCATCGG TTTTGTGGTG TTCATTGAGC GTGGTCAGCG TCGAATAGCC
GTTCACTATG CCAAGCGTCA GCAGGGCCGC AAGGTCTTCG CTGCGCAGAC AAGCCACCTA
CCGTTGAAAG TGAACATGGC TGGCGTAATT CCGGCCATTT TCGCGAGCAG CATTTTGCTG
TTCCCGGCTT CGTTGGGGTC CTGGTTCGGT CAGTCTGAAG GTCTGGGCTG GTTGCAGGAC
ATCTCGCAGT CGATCGCTCC TGGTCAGCCG TTGAATATTC TGCTGTTTAG TGCAGGGATT
ATTTTCTTCT GCTTCTTCTA TACGGCGTTG ATGTTCAATC CGAAAGACGT AGCGGAAAAC
CTGAAGAAGT CCGGTGCCTT TATTCCGGGT ATCCGTCCAG GCGAGCAGTC GGCGCGCTAC
ATTGATGGCG TTCTGACTCG TTTGACCATG TTCGGTGCTC TATATATGAC GGCCGTGTGT
CTGCTTCCCC AGTTTCTGGT GGTCGCGGCA AACGTACCGT TCTACCTTGG CGGGACCTCG
TTGCTGATCG TGGTCGTGGT TGTGATGGAC TTTATGTCGC AAGTGCAATC TCACCTCGTT
TCGCACCAGT ACGAATCCCT GATGAAGAAA GCCAACCTGA AGGGCTACGG TGGCAGCGGC
GGTATGCTGC GCTGA
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| Protein sequence | MAKQGALSAL GKGGMSELWA RLRFLFLAII VYRIGAHIPV PGINPDRLAE LFRQNEGTIL
SLFNMFSGGA LERMSIFALG IMPYISASII MQLMTAVSPQ LEQLKKEGEA GRRKISQYTR
YGTVVLALVQ AIGMSVGLAS QGVAFSGDLG FHFVAVTTFV AGAMFMMWLG EQITERGVGN
GISMLIFAGI VAGLPRAIGQ SFESARQGDI NIFALVAIGL LAVAIIGFVV FIERGQRRIA
VHYAKRQQGR KVFAAQTSHL PLKVNMAGVI PAIFASSILL FPASLGSWFG QSEGLGWLQD
ISQSIAPGQP LNILLFSAGI IFFCFFYTAL MFNPKDVAEN LKKSGAFIPG IRPGEQSARY
IDGVLTRLTM FGALYMTAVC LLPQFLVVAA NVPFYLGGTS LLIVVVVVMD FMSQVQSHLV
SHQYESLMKK ANLKGYGGSG GMLR
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