| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0642 |
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| Symbol | rplR |
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| ID | 1182262 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 699254 |
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| End bp | 699604 |
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| Gene Length | 351 bp |
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| Protein Length | 116 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637392017 |
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| Product | ribosomal protein L18 |
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| Protein accession | NP_790489 |
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| Protein GI | 28867870 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0256] Ribosomal protein L18 |
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| TIGRFAM ID | [TIGR00060] ribosomal protein L18, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00442268 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCGTCA AAAAAGTTAC CCGACTGCGT CGCGCTCGCA AAGCACGCCT GAAAATGCAC
GAGCTGGAAG TCGTGCGTCT CTGCGTGCAC CGCTCTTCGC AGCACATTTA TGCCCAGGTC
ATCTCGGCCG ACGGCAGCAA AGTTCTGGCA AGCGCCTCTA CTTTGGACAA AGAACTGCGT
GATGGCGCCA CTGGCAACAT CGACGCGGCC ACTAAGGTTG GCAAGCTGGT CGCCGAGCGC
GCGAAAGCCG CGGGTGTATC GCAAGTCGCT TTCGACCGTT CTGGCTTCAA GTACCACGGC
CGTGTCAAAG CGCTGGCTGA TGCTGCTCGT GAAGGCGGGC TGGAGTTCTA A
|
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| Protein sequence | MTVKKVTRLR RARKARLKMH ELEVVRLCVH RSSQHIYAQV ISADGSKVLA SASTLDKELR
DGATGNIDAA TKVGKLVAER AKAAGVSQVA FDRSGFKYHG RVKALADAAR EGGLEF
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