Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0632 |
Symbol | rpsC |
ID | 1182252 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 694921 |
End bp | 695607 |
Gene Length | 687 bp |
Protein Length | 228 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637392007 |
Product | ribosomal protein S3 |
Protein accession | NP_790479 |
Protein GI | 28867860 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0092] Ribosomal protein S3 |
TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00163492 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTCAGA AAGTACATCC CATTGGCATT CGCCTGGGAA TCGTCAAGGA GCACACCTCC GTCTGGTACG CAGACGGTCG GACTTATGCG GACTATTTGT TCGCTGATCT GAAAGTGCGT GAGTACCTCC AAGACAAATT AAAAAGCGCG TCCGTCAGCC GTATCGATAT CCATCGTCCG GCTCAGACAG CACGTATCAC CATCCACACC GCTCGTCCCG GCATCGTGAT CGGCAAGAAA GGTGAAGATG TTGAGAAACT GCGTCAGGAC CTGACCAAGC AAATGGGTGT GCCTGTGCAC ATCAATATCG AAGAGATCCG CAAGCCGGAG CTTGACGGTA TGCTGGTTGC GCAGAGCGTA GCTCAGCAGC TGGAGCGTCG TGTAATGTTC CGTCGCGCTA TGAAGCGCGC TGTTCAGAAC GCCATGCGCA TTGGTGCCAA AGGCATCAAA ATCCAAGTGA GCGGTCGTCT CGGCGGTGCT GAAATCGCAC GTACTGAATG GTATCGCGAG GGTCGTGTGC CATTGCACAC CCTGCGTGCC GACATCGACT ATGCCAACTA CGAAGCTCAC ACCACTTATG GTGTGATCGG TGTAAAGGTT TGGATCTTCA AAGGCGAAGT AATTGGTGGT CGCCAAGAAG AACTGAAACC ACAAGCACCA GCGCCTCGTA AAAAAGCTGC TAAGTAA
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Protein sequence | MGQKVHPIGI RLGIVKEHTS VWYADGRTYA DYLFADLKVR EYLQDKLKSA SVSRIDIHRP AQTARITIHT ARPGIVIGKK GEDVEKLRQD LTKQMGVPVH INIEEIRKPE LDGMLVAQSV AQQLERRVMF RRAMKRAVQN AMRIGAKGIK IQVSGRLGGA EIARTEWYRE GRVPLHTLRA DIDYANYEAH TTYGVIGVKV WIFKGEVIGG RQEELKPQAP APRKKAAK
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