Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0627 |
Symbol | rplD |
ID | 1182247 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 692532 |
End bp | 693134 |
Gene Length | 603 bp |
Protein Length | 200 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637392002 |
Product | ribosomal protein L4 |
Protein accession | NP_790474 |
Protein GI | 28867855 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0088] Ribosomal protein L4 |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000698865 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCAATTAA ATGTAAATGA CGCTCAGGCA ATCGAAGTTT CCGAACTGAC ATTTGGCGGC GAATTCAACG AGACGCTGGT TCACCAGGCA GTCGTGGCCT ACATGGCTGG CGGTCGTCAG GGTAGCAAGC AGCAAAAGAC CCGTTCCGAC GTTCGTGGTG GCGGTAAGCG CCCTTGGCGT CAGAAAGGTA CTGGCCGTGC TCGTGCCGGT ACTATCCGTA GCCCAATCTG GCGCGGCGGC GGTACCACTT TCGCAGCTCG TCCTCAGGAT CACACTCAGA AGCTCAACAA GAAGATGTAT CGCGCAGCTT TGCGCTCCAT CCTTGCTGAA CTGGTTCGTA CTGATCGTCT GGTCGTGGTT CAGGATTTCG CTGTTGAAGC ACCGAAAACC AAAGATTTGC TGAACAAGCT GACTGGCATG GGCCTGACTG ACGTCTTGAT CGTGTCTGAC GCTGTTGACC AGAATCTGTA CCTGGCTGCT CGTAACCTGC CGCACGTCGA TGTACGTGAT GTTCAAGGTT CCGATCCAGT TAGTCTGATC GCATACGACA AGGTGTTGAT CACCGTGTCG GCCGTGAAGA AATTCGAGGA GCTGCTGGGA TGA
|
Protein sequence | MQLNVNDAQA IEVSELTFGG EFNETLVHQA VVAYMAGGRQ GSKQQKTRSD VRGGGKRPWR QKGTGRARAG TIRSPIWRGG GTTFAARPQD HTQKLNKKMY RAALRSILAE LVRTDRLVVV QDFAVEAPKT KDLLNKLTGM GLTDVLIVSD AVDQNLYLAA RNLPHVDVRD VQGSDPVSLI AYDKVLITVS AVKKFEELLG
|
| |