Gene PSPTO_0626 details

Gene Information

• Locus tag: PSPTO_0626
• Symbol: rplC
• ID: 1182246
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 691884
• End bp: 692519
• Gene Length: 636 bp
• Protein Length: 211 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 637392001
• Product: ribosomal protein L3
• Protein accession: NP_790473
• Protein GI: 28867854
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0087] Ribosomal protein L3
• TIGRFAM ID: [TIGR03625] 50S ribosomal protein L3, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.00000165351
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACTATTG GTGTAGTCGG TCGTAAATGC GGTATGACCC GTATTTTCAC CGAAGAAGGT 
GTCTCCATTC CGGTCACGGT CATTGAGATC GAGCCGAATC GCGTCACTCA GTTCAAAACC 
GAAGAAACCG ATGGCTATCG TGCAGTGCAA GTCACTGTCG GCGAGCGTCG CGCTTCGCGT 
GTTACAGCCG CTCAGGCTGG CCACTTCGCT AAAGCGAATG TAGCCGCCGG TCGTACCGTC 
ATGGAATTCC GTCTTGAAGA AGGCGAGTAC CAGGCTGGCG ATCAGATCAA CGCTGAAATC 
TTCGCTGCTG GTCAACTGGT TGATGTAACC GGTCAGTCCA AAGGTAAAGG CTTCCAGGGT 
ACGATCAAGC GCTGGAATTT CCGTGGTCAA GACAATACCC ACGGTAACTC CGTCTCCCAC 
CGCGTCCCGG GCTCTATCGG CCAGTGCCAG ACTCCTGGTC GTGTATTCAA GGGCAAAAAA 
ATGTCCGGTC ATATGGGCGC TGAGCGCGTG ACCGTGCAGT CCCTCGAAGT GGTGCGCGTG 
GACGCTGAAC GCAATCTGTT GTTGGTCAAG GGTGCTGTTC CTGGCGCTAC TGGCGGCAAC 
CTGGTTGTAC GTCCGGCAGC CAAGGCTCGC GGTTAA 

 

Protein sequence

MTIGVVGRKC GMTRIFTEEG VSIPVTVIEI EPNRVTQFKT EETDGYRAVQ VTVGERRASR 
VTAAQAGHFA KANVAAGRTV MEFRLEEGEY QAGDQINAEI FAAGQLVDVT GQSKGKGFQG 
TIKRWNFRGQ DNTHGNSVSH RVPGSIGQCQ TPGRVFKGKK MSGHMGAERV TVQSLEVVRV 
DAERNLLLVK GAVPGATGGN LVVRPAAKAR G