| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0620 |
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| Symbol | rpoC |
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| ID | 1182240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 682627 |
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| End bp | 686826 |
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| Gene Length | 4200 bp |
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| Protein Length | 1399 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637391995 |
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| Product | DNA-directed RNA polymerase, beta' subunit |
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| Protein accession | NP_790467 |
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| Protein GI | 28867848 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.354282 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAGACC TACTGAATTT GCTGAAAAAC CAGGGTCAAG TCGAAGAGTT CGACGCAATC
CGTATCGGAC TTGCATCGCC TGAGATGATC CGCTCTTGGT CGTTCGGTGA AGTTAAAAAG
CCGGAAACCA TCAACTACCG TACGTTCAAG CCTGAGCGTG ACGGTCTGTT CTGCGCCAAG
ATCTTTGGTC CGGTAAAAGA TTACGAGTGC CTGTGCGGTA AGTACAAGCG CCTGAAGCAC
CGCGGTGTCA TCTGCGAAAA GTGCGGTGTT GAAGTGGCTC TGGCCAAGGT TCGTCGCGAG
CGCATGGCTC ACATCGAACT GGCTTCGCCG GTTGCCCACA TCTGGTTCCT GAAATCGCTG
CCGTCCCGTA TCGGCTTGCT GATGGACATG ACCCTGCGCG ATATCGAGCG TGTTCTCTAC
TTCGAGAGCT ATGTCGTTAT CGATCCAGGC ATGACCACCC TTGAAAAAGG TCAGTTGCTG
AACGACGAGC AGTACTTCGA AGCCCTCGAA GAGTTCGGTG ATGATTTTGA CGCCCGCATG
GGCGCCGAAG CTGTCCGTGA ACTGCTGCAC GCTATCGATC TGGAGCACGA AATTGGCCGT
CTGCGTGAAG AGATTCCGCA AACCAATTCC GAGACCAAGA TCAAGAAGCT GTCCAAGCGT
CTGAAACTGA TGGAAGCTTT CCAGGGTTCC GGCAACCTTC CTGAGTGGAT GGTGCTGACC
GTTCTGCCGG TTCTGCCGCC AGATCTGCGT CCTCTGGTTC CGCTTGACGG TGGTCGTTTC
GCAACGTCCG ACCTCAACGA TCTGTATCGT CGAGTGATCA ACCGTAACAA CCGTCTGAAG
CGTCTGCTGG ATCTGTCTGC TCCCGATATC ATCGTGCGCA ACGAAAAGCG CATGCTGCAG
GAAGCGGTCG ATGCATTGCT CGACAACGGT CGTCGTGGTC GCGCAATCAC CGGTTCCAAC
AAGCGCCCTC TGAAATCCCT GGCTGACATG ATCAAGGGTA AGCAGGGTCG TTTCCGTCAG
AACTTGCTCG GTAAGCGTGT TGACTACTCG GGTCGTTCGG TAATTACCGT AGGTCCGACC
CTGCGTCTGC ACCAGTGCGG TCTGCCGAAG AAAATGGCTC TCGAGCTGTT CAAGCCGTTC
ATTTTCGGCA AGCTGGAAAT GCGTGGCCTG GCCACGACCA TCAAAGCAGC CAAGAAAATG
GTCGAGCGCG AGCTGCCAGA AGTCTGGGAC GTTCTTGCAG AAGTCATTCG CGAACACCCG
GTGCTTCTGA ACCGTGCGCC AACGCTTCAC CGTCTTGGCA TCCAGGCATT TGAACCGGTT
CTGATCGAAG GTAAGGCTAT TCAGCTTCAC CCGCTGGTCT GCGCCGCGTA CAACGCCGAC
TTCGACGGTG ACCAGATGGC TGTTCACGTT CCTTTGACGC TGGAAGCCCA GCTCGAAGCG
CGTGCACTGA TGATGTCGAC CAACAACATC CTGTCGCCAG CCAACGGTGA GCCAATCATC
GTTCCTTCGC AGGACGTTGT ACTGGGTCTG TACTACATGA CCCGTGAAGC GATCAATGCC
AAGGGCGAAG GTCGTGTGTT TGCGGACCTG CAGGAAGTCG ACCGGGTATT TCGCGCCGGC
GAAGCGGCTC TGCACGCCAA GGTCAAGGTT CGTATCCACG AAACGGTCAA CGACCGTGAT
GGTGGCAGCG TCAAGAACAC CCGTATCGTC GACACCACTG TCGGCCGTGC GCTGTTGTTC
CAGGTGGTTC CGGCCGGTCT GTCCTACGAC GTCGTCAACC AGCCGATGAA GAAAAAGGCG
ATCTCCAAAC TGATCAACCA GTGCTACCGC GTGGTTGGTT TGAAAGAGAC CGTTATCTTC
GCTGACCAGT TGATGTACAC CGGTTTTGCC TATTCGACCA TTTCGGGTGT CTCCATCGGC
GTTAACGACT TCGTTATCCC TGATGAGAAA GCTCGCATCA TCGACGCAGC CACCGAAGAA
GTTAAAGAGA TCGAAAGCCA GTACGCTTCC GGCCTGGTAA CCCAGGGCGA GAAGTACAAC
AAGGTGATCG ACCTTTGGTC CAAGGCGAAC GACGAAGTCT CGAAAGCGAT GATGTCGAAC
CTGTCCAAAG AACGCGTTAT CGACCGTCAC GGCGTCGAAG TTGATCAGGA ATCCTTCAAC
TCGATGTACA TGATGGCTGA CTCCGGGGCG CGTGGTTCTG CTGCCCAGAT TCGTCAGCTG
GCCGGTATGC GTGGTCTGAT GGCCAAGCCT GATGGCTCCA TTATTGAAAC GCCGATCACT
GCTAACTTCC GTGAAGGTTT GAGCGTACTT CAGTACTTCA TCTCCACTCA CGGTGCTCGT
AAGGGTCTTG CGGATACCGC GTTGAAAACT GCTAACTCCG GTTATCTGAC ACGTCGTCTG
GTAGACGTGG CTCAGGATCT GGTCGTTACC GAAGTGGATT GCGGTACCGA GCACGGCCTG
CTGATGACTC CGCACATTGA AGGCGGCGAC GTTGTAGAGC CGCTGGGTGA GCGCGTACTG
GGTCGAGTCA TTGCCCGTGA CGTGTTCAAG CCGGGTACAG AAGAAATCAT CGTGCCTGCA
GGCACTCTGG TGGACGAGAA GTGGGTCGAG TTCATCGAGC TGAACAGCAT CGACGAAGTG
ATCGTTCGCT CGCCAATCAG CTGTGAAACC CGCTATGGCA TATGCGCCAA GTGCTACGGT
CGCGACCTGG CTCGTGGTCA CCAGGTCAAC ATTGGTGAAG CTGTCGGCGT AATTGCTGCA
CAGTCGATCG GTGAGCCAGG TACCCAGCTG ACAATGCGTA CCTTCCACAT TGGTGGTGCG
GCAAGCCGGA CCTCGGCAGC TGACAGTGTT CAGGTGAAGA ATGGCGGTAC TGTCCGTCTG
CATAACCTGA AGCACGTCGA GCGTGTCGAC GGTCACCTGG TTGCGGTATC CCGCTCTGGT
GAGCTGGCAA TCGCAGACGA TTTCGGTCGT GAGCGCGAGC GTTACAAGCT GCCTTACGGT
GCAGTGATTT CGGTGAAGGA AGGCGACAAG GTCGACGCTG GTTCGATCGT GGCCAAGTGG
GATCCTCACA CCCACCCAAT CGTCACCGAG ATGAAAGGTA CTGTTACCTA CGTCGGCATG
GAAGAGGGCA TCACGATCAA GCGTCAGACA GACGAATTGA CCGGTATGAC CAATATTGAA
GTGCTTGATG CGAAAGACCG CCCGGCTGCT GGCAAGGACA TTCGTCCTGC TGTGAAGATG
GTGGGTCTGG ATGGCAAGGA TCTGTTGCTG CCGGGTACTG ACGTGCCTGC CCAGTACTTC
CTGCCGGCTA ACGCCCTGGT TGGTGTGGCT GACGGTGCGC AGATCGCGAT CGGTGATGTT
ATCGCTCGTA TTCCGCAAGA GACTTCGAAG ACCCGTGACA TCACCGGTGG TCTGCCGCGT
GTTGCCGACC TTTTCGAAGC ACGTCGTCCG AAAGAGGCTT CGATCCTTGC AGAAGTCAGC
GGTACCATCG CATTCGGTAA AGAGACCAAA GGCAAGCGTC GTCTGGTCAT TACCCCGAAC
GACGGTAGCG ATCCGTACGA GGAGCTGATT CCGAAGTGGC GTCACCTGAA CGTCTTCGAA
GGCGAACAAG TGAACCGCGG CGAAGTTATC TCTGACGGCC CTAGCGATCC ACACGATATC
CTGCGTTTGC TGGGTGTCAG CGCGCTGGCC AAGTACATCG TCAACGAGAT TCAAGACGTA
TACCGTCTGC AAGGCGTGAA GATCAACGAC AAGCACATCG AGACCATTCT GCGTCAGATG
TTGCGTAAAG TTGAGATTGC CGAGTCTGGC GATTCCAGTT TCATCAAGGG CGACCAGATG
GAATTGACTC ACGTTCTGGT AGAAAACGAG CGTTTGGGCG CAGACGACAA GTTTGTCTCC
AAATTCACTC GTGTGTTGCT GGGTATCACC AAGGCATCGT TGTCCACCGA GTCGTTCATT
TCCGCGGCCT CCTTCCAGGA GACAACCCGC GTACTGACCG AAGCGGCTGT GACAGGCAAG
CGCGACTACC TTCGCGGCCT GAAAGAAAAC GTGGTCGTGG GTCGTTTGAT CCCGGCCGGT
ACCGGTCTGG CTTATCACAG CGAGCGTAAG CGTCGCCGTG AAATGGACAA ACCGACCCGT
GTCAGCGCGA GCGAAGTAGA AGCTGCTCTG ACCGAAGCGT TGAACTCCAG CGGTAATTGA
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| Protein sequence | MKDLLNLLKN QGQVEEFDAI RIGLASPEMI RSWSFGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVALAKVRRE RMAHIELASP VAHIWFLKSL
PSRIGLLMDM TLRDIERVLY FESYVVIDPG MTTLEKGQLL NDEQYFEALE EFGDDFDARM
GAEAVRELLH AIDLEHEIGR LREEIPQTNS ETKIKKLSKR LKLMEAFQGS GNLPEWMVLT
VLPVLPPDLR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLDLSAPDI IVRNEKRMLQ
EAVDALLDNG RRGRAITGSN KRPLKSLADM IKGKQGRFRQ NLLGKRVDYS GRSVITVGPT
LRLHQCGLPK KMALELFKPF IFGKLEMRGL ATTIKAAKKM VERELPEVWD VLAEVIREHP
VLLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAYNAD FDGDQMAVHV PLTLEAQLEA
RALMMSTNNI LSPANGEPII VPSQDVVLGL YYMTREAINA KGEGRVFADL QEVDRVFRAG
EAALHAKVKV RIHETVNDRD GGSVKNTRIV DTTVGRALLF QVVPAGLSYD VVNQPMKKKA
ISKLINQCYR VVGLKETVIF ADQLMYTGFA YSTISGVSIG VNDFVIPDEK ARIIDAATEE
VKEIESQYAS GLVTQGEKYN KVIDLWSKAN DEVSKAMMSN LSKERVIDRH GVEVDQESFN
SMYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLSVL QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVAQDLVVT EVDCGTEHGL LMTPHIEGGD VVEPLGERVL
GRVIARDVFK PGTEEIIVPA GTLVDEKWVE FIELNSIDEV IVRSPISCET RYGICAKCYG
RDLARGHQVN IGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRTSAADSV QVKNGGTVRL
HNLKHVERVD GHLVAVSRSG ELAIADDFGR ERERYKLPYG AVISVKEGDK VDAGSIVAKW
DPHTHPIVTE MKGTVTYVGM EEGITIKRQT DELTGMTNIE VLDAKDRPAA GKDIRPAVKM
VGLDGKDLLL PGTDVPAQYF LPANALVGVA DGAQIAIGDV IARIPQETSK TRDITGGLPR
VADLFEARRP KEASILAEVS GTIAFGKETK GKRRLVITPN DGSDPYEELI PKWRHLNVFE
GEQVNRGEVI SDGPSDPHDI LRLLGVSALA KYIVNEIQDV YRLQGVKIND KHIETILRQM
LRKVEIAESG DSSFIKGDQM ELTHVLVENE RLGADDKFVS KFTRVLLGIT KASLSTESFI
SAASFQETTR VLTEAAVTGK RDYLRGLKEN VVVGRLIPAG TGLAYHSERK RRREMDKPTR
VSASEVEAAL TEALNSSGN
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