| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0619 |
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| Symbol | rpoB |
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| ID | 1182239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 678489 |
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| End bp | 682562 |
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| Gene Length | 4074 bp |
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| Protein Length | 1357 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637391994 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | NP_790466 |
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| Protein GI | 28867847 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.739155 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTACT CATATACTGA GAAAAAACGT ATCCGCAAGG ACTTTAGCAA GTTGCCGGAC
GTAATGGATG TGCCGTATCT CTTGGCCATC CAGCTGGATT CGTATCGCGA ATTCCTGCAG
GCGGGAGCGA CCAAAGATCA GTTCCGCGAC GTCGGTCTGC ATGCAGCCTT CAAATCCGTT
TTCCCGATCA TCAGCTACTC CGGCAATGCT GCGCTGGAGT ATGTAGGTTA TCGCTTGGGC
GAACCGGCAT TTGATGTCAA GGAATGCGTG CTGCGCGGTG TGACTTACGC AGTACCTCTG
CGAGTCAAGG TCCGTCTGAT CATTTTCGAC AAAGAATCGT CGAACAAAGC GATCAAGGAC
ATCAAAGAGC AAGAAGTCTA CATGGGTGAA ATCCCCCTGA TGACTGAAAA CGGTACCTTT
GTAATCAACG GCACCGAGCG CGTTATCGTG TCTCAGCTTC ACCGCTCGCC AGGCGTATTC
TTCGACCACG ACCGTGGCAA GACGCACAGC TCCGGTAAGC TGCTTTATTC CGCGCGTATC
ATTCCTTACC GTGGTTCGTG GCTGGACTTC GAGTTCGATC CGAAAGACTG CGTATTCGTC
CGTATCGACC GTCGTCGCAA GCTGCCTGCG TCCGTGCTTC TGCGCGCGCT GGGCTACACC
ACCGAGCAAG TGCTCGATGC TTTCTATACC ACTAACGTAT TCCATGTTCG CGGCGAAAAC
CTGAACCTGG AGCTGGTGCC TCAGCGCCTG CGTGGTGAAA TTGCCGTTCT GGATATCCTG
GACGACAAAG GCAAGGTCAT TGTCGAGCAG GGTCGTCGTA TCACTGCCCG TCACATCAAC
CAGCTGGAAA AAGCCGGGAT CAAAGAGCTG GAAGTACCTC TGGACTACGT CCTGGGTCGT
ACGACTGCCA AGGTCATCGT GCATCCGGCA ACCGGTGAGA TCATTGCCGA GTGCAACACC
GAGCTGAACA CCGAAATCCT CGGCAAGATT GCCAAGGCTC AGGTTGTTCG CATCGAGACG
TTGTACACCA ACGACATCGA TTGCGGCCCG TTCGTTTCGG ACACGCTGAA AATCGACTCC
ACCAGCAATC AGCTGGAAGC GTTGGTCGAG ATCTACCGCA TGATGCGTCC TGGTGAGCCA
CCGACCAAGG ATGCAGCAGA AACGCTGTTC AACAACCTGT TCTTCAGTCC TGAGCGCTAT
GACCTGTCTG CTGTAGGTCG TATGAAGTTC AACCGTCGTA TCGGTCGGAC CGAAATCGAA
GGTTCGGGCG TGCTGTGCAA GGAAGACATC GTAGCGGTCC TCAAGACCCT CGTTGATATC
CGTAACGGCA AAGGCATCGT CGATGACATC GACCACCTCG GTAACCGTCG TGTTCGTTGC
GTAGGCGAGA TGGCCGAGAA CCAGTTCCGT GTAGGTCTGG TCCGTGTTGA GCGTGCAGTC
AAAGAACGCC TTTCCATGGC AGAAAGTGAA GGCCTGATGC CTCAGGACCT GATCAACGCC
AAGCCTGTTG CGGCAGCGGT CAAGGAATTC TTCGGTTCCA GCCAGCTTTC CCAGTTCATG
GACCAGAACA ACCCGCTGTC CGAGATTACT TGCAAGCGTC GTGTTTCTGC ACTCGGCCCT
GGTGGTTTGA CTCGTGAGCG TGCCGGCTTT GAAGTTCGAG ACGTTCACCC GACTCACTAC
GGTCGCGTGT GCCCTATCGA AACGCCGGAA GGTCCGAACA TCGGCCTGAT CAACTCCCTC
GCGGCCTATG CCCGCACCAA CCAGTACGGT TTCCTCGAGA GCCCGTACCG TGTTGTTAAG
GAAGGTCTGG TCACCGACGA AATCGTGTTC CTTTCAGCGA TCGAAGAAGC TGACCACGTC
ATTGCACAGG CTTCGGCCGC AATGAACGAC AAGCAAGAGC TGATCGACGA GCTGGTTGCT
GTGCGTCACT TGAACGAATT CACCGTCAAG GCGCCAGCCG ATGTCACCCT GATGGACGTT
TCGCCCAAGC AGGTTGTTTC GGTAGCCGCT TCGTTGATTC CGTTCCTCGA GCACGATGAC
GCCAACCGTG CGTTGATGGG TTCGAACATG CAGCGTCAGG CTGTACCAAC CTTGCGTGCC
GACAAGCCGC TGGTGGGTAC CGGCATGGAG CGCAACGTTG CTCGCGACTC CGGCGTTTGC
GTCGTGGCCC GTCGTGGTGG CGTGATCGAC TCGGTTGATG CCAGCCGTAT CGTTGTTCGC
GTTGCCGATG ATGAAGTTGA AACAGGTGAG GCCGGTGTAG ACATCTACAA CCTGACCAAA
TACACCCGTT CGAACCAGAA CACCTGCATC AACCAGCGTC CGCTGGTAAG CAAGGGTGAT
CGTGTTCAGC GTAGCGATAT CATGGCCGAC GGCCCGTCCA CCGATATGGG TGAGCTGGCG
CTGGGTCAGA ACATGCGTAT CGCGTTCATG GCCTGGAACG GTTTCAACTT CGAAGACTCC
ATCTGTCTCT CTGAGCGTGT AGTTCAGGAA GACCGCTTCA CCACGATCCA CATTCAGGAA
CTGACCTGTG TGGCGCGTGA CACCAAGCTT GGGCCTGAGG AAATCACAGC TGACATCCCG
AACGTGGGTG AAGCTGCTCT GAACAAGCTG GACGAAGCCG GTATCGTTTA CGTAGGTGCC
GAAGTCGGCG CTGGCGATAT CCTGGTGGGC AAGGTCACCC CGAAAGGCGA GACCCAGCTG
ACGCCGGAAG AAAAACTGTT GCGCGCTATC TTCGGTGAGA AGGCCAGCGA CGTTAAGGAC
ACTTCCCTGC GTGTGCCTAC CGGCACCAAA GGTACTGTCA TCGACGTTCA GGTCTTCACC
CGTGATGGTG TCGAGCGTGA TGCACGTGCT CTGTCCATTG AGAAGTCGCA GCTCGACGAG
ATCCGCAAGG ATCTGAACGA AGAGTTCCGT ATTGTCGAAG GCGCTACTTT CGAACGTCTG
CGCTCTGCGC TGGTCGGTCG TGTAGCAGAA GGCGGTGCTG GCCTCAAGAA AGGTCAGGAA
ATCACCAACG AAGTGCTCGA CGGCCTTGAG CATGGTCAGT GGTTCAAGCT GCGCATGGCT
GAAGACGCTC TGAACGAGCA GCTTGAGAAA GCACAGGCTT ACATCGTTGA TCGTCGTCGC
CTTCTGGATG ACAAGTTTGA AGACAAGAAG CGCAAACTGC AGCAGGGCGA TGACCTGGCT
CCAGGCGTTC TGAAAATCGT CAAGGTTTAC CTGGCAATCC GTCGCCGCAT TCAGCCGGGC
GACAAGATGG CCGGTCGTCA CGGTAACAAG GGTGTGGTCT CTGTGATCAT GCCGGTTGAA
GACATGCCGC ACGATGCCAA TGGCACGCCG GTTGATATCG TCCTCAACCC GCTGGGCGTA
CCTTCGCGTA TGAACGTTGG TCAGATTCTC GAAACTCACC TGGGCCTTGC AGCCAAAGGT
CTGGGCGAGA AGATCAACCG CATGCTTGAA GAGCAGCGTA AAGTTATCGA GTTGCGCAAG
TTCCTCAACG AGATCTACAA CGAAATCGGT GGTCGCCAGG AAGCCCTGGA AGACCTTACC
GACAACGAAA TTCTGGACCT CGCCAAGAAC CTGCGTAACG GCGTACCAAT GGCTACCCCG
GTTTTTGACG GTGCCAAGGA AAGCGAAATC AAGGCAATGC TCAAACTGGC AGATATGCCG
GAAAGCGGCC AGATGCAGCT GTTTGACGGT CGTACCGGCA ACAAGTTTGA GCGCCCGGTT
ACAGTCGGCT ACATGTACAT GCTGAAGCTG AACCACTTGG TGGACGACAA GATGCACGCG
CGTTCCACTG GTTCGTACAG CCTGGTTACC CAGCAGCCGC TGGGTGGTAA GGCACAGTTC
GGTGGTCAGC GTTTCGGGGA GATGGAAGTG TGGGCGCTGG AAGCATACGG CGCGGCGTAC
ACTCTGCAAG AAATGCTCAC AGTGAAGTCG GACGATGTGA ACGGCCGTAC CAAGATGTAC
AAAAACATCG TGGATGGCGA TCACCGTATG GAGCCGGGCA TGCCCGAGTC TTTCAACGTG
TTGATCAAAG AAATTCGTTC GCTCGGTATC GATATCGATC TGGAAACCGA ATAA
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| Protein sequence | MAYSYTEKKR IRKDFSKLPD VMDVPYLLAI QLDSYREFLQ AGATKDQFRD VGLHAAFKSV
FPIISYSGNA ALEYVGYRLG EPAFDVKECV LRGVTYAVPL RVKVRLIIFD KESSNKAIKD
IKEQEVYMGE IPLMTENGTF VINGTERVIV SQLHRSPGVF FDHDRGKTHS SGKLLYSARI
IPYRGSWLDF EFDPKDCVFV RIDRRRKLPA SVLLRALGYT TEQVLDAFYT TNVFHVRGEN
LNLELVPQRL RGEIAVLDIL DDKGKVIVEQ GRRITARHIN QLEKAGIKEL EVPLDYVLGR
TTAKVIVHPA TGEIIAECNT ELNTEILGKI AKAQVVRIET LYTNDIDCGP FVSDTLKIDS
TSNQLEALVE IYRMMRPGEP PTKDAAETLF NNLFFSPERY DLSAVGRMKF NRRIGRTEIE
GSGVLCKEDI VAVLKTLVDI RNGKGIVDDI DHLGNRRVRC VGEMAENQFR VGLVRVERAV
KERLSMAESE GLMPQDLINA KPVAAAVKEF FGSSQLSQFM DQNNPLSEIT CKRRVSALGP
GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL AAYARTNQYG FLESPYRVVK
EGLVTDEIVF LSAIEEADHV IAQASAAMND KQELIDELVA VRHLNEFTVK APADVTLMDV
SPKQVVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPTLRA DKPLVGTGME RNVARDSGVC
VVARRGGVID SVDASRIVVR VADDEVETGE AGVDIYNLTK YTRSNQNTCI NQRPLVSKGD
RVQRSDIMAD GPSTDMGELA LGQNMRIAFM AWNGFNFEDS ICLSERVVQE DRFTTIHIQE
LTCVARDTKL GPEEITADIP NVGEAALNKL DEAGIVYVGA EVGAGDILVG KVTPKGETQL
TPEEKLLRAI FGEKASDVKD TSLRVPTGTK GTVIDVQVFT RDGVERDARA LSIEKSQLDE
IRKDLNEEFR IVEGATFERL RSALVGRVAE GGAGLKKGQE ITNEVLDGLE HGQWFKLRMA
EDALNEQLEK AQAYIVDRRR LLDDKFEDKK RKLQQGDDLA PGVLKIVKVY LAIRRRIQPG
DKMAGRHGNK GVVSVIMPVE DMPHDANGTP VDIVLNPLGV PSRMNVGQIL ETHLGLAAKG
LGEKINRMLE EQRKVIELRK FLNEIYNEIG GRQEALEDLT DNEILDLAKN LRNGVPMATP
VFDGAKESEI KAMLKLADMP ESGQMQLFDG RTGNKFERPV TVGYMYMLKL NHLVDDKMHA
RSTGSYSLVT QQPLGGKAQF GGQRFGEMEV WALEAYGAAY TLQEMLTVKS DDVNGRTKMY
KNIVDGDHRM EPGMPESFNV LIKEIRSLGI DIDLETE
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