Gene PSPTO_0617 details

Gene Information

• Locus tag: PSPTO_0617
• Symbol: rplJ
• ID: 1182237
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 677322
• End bp: 677822
• Gene Length: 501 bp
• Protein Length: 166 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 637391992
• Product: ribosomal protein L10
• Protein accession: NP_790464
• Protein GI: 28867845
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0244] Ribosomal protein L10

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 0.532211
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGCAATTA AACTCGAAGA CAAGAAGGCC ATCGTCGCTG AAGTCAACGA GGCTGCCAAA 
GCTGGTCTGT CCGCTGTCGT GGCTGATGCC CGTGGTGTGA CAGTCGGCGC TATGACCGGA 
CTCCGTAAAG AGGCTCGTGA AGCTGGCGTT TACGTACGCG TTGTACGTAA CACCCTACTC 
AAGCGCGCTG TTGCTGACAC TGAATTCAGT GTCCTCAACG ACGTGTTCAC CGGCCCGACC 
TTGATCGCGT TCTCCAACGA ACATCCTGGC GCTGCTGCCC GGTTGTTCAA GGAATTCGCG 
AAAGGTCAGG ACAAGTTCGA GATCAAGGCA GCTGCGTTCG AGGGCAAGTT CCTCGCAGCT 
AATCAGATCG ACGTACTGGC AACCTTGCCG ACCCGTAACG AAGCAATTTC TCAGCTGATG 
AGCGTGATTC AAGGCGCTAC CAGCAAATTG GCTCGTACTC TGGCGGCTGT TCGCGACCAA 
AAAGAAGCAG CTGCAGCTTA A 

 

Protein sequence

MAIKLEDKKA IVAEVNEAAK AGLSAVVADA RGVTVGAMTG LRKEAREAGV YVRVVRNTLL 
KRAVADTEFS VLNDVFTGPT LIAFSNEHPG AAARLFKEFA KGQDKFEIKA AAFEGKFLAA 
NQIDVLATLP TRNEAISQLM SVIQGATSKL ARTLAAVRDQ KEAAAA