| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0569 |
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| Symbol | |
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| ID | 1182180 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 625342 |
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| End bp | 627264 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637391936 |
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| Product | autotransporting lipase, GDSL family |
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| Protein accession | NP_790416 |
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| Protein GI | 28867797 |
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| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3240] Phospholipase/lecithinase/hemolysin |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCAAGA CATCAAGGTG CTGGCCCTTC GCGGCCTGCC TGCTATCGCT GGCCTGTGGC
ACCGCCACTG CGGGGCCCTA TTCGACCATG GTGGTGTTCG GCGACAGCCT GGCAGATGCC
GGACAGTTCC CGGACACCGC TGGCCCCAGA GGCTCCACGT TGCGCTTCAC CAATCGCGTC
GGCCCGACGT ATCAGGATGG CAGCGGTGAA GTGTTCAACC TGAACTCATC GACGCTGATC
GGCAGAATGC TCAATGTCTC GGCGGGTGAT CTGGCAGCCT CCACCTCACC CGTCAACGCC
GCGCTGGGGC AGGCGGATGG CAATAACTGG GCTGTCGGTG GTTACCGAAC GGACCAGATC
CTTGATTCGA TCAACTCGCA ATCCACCGTG GTCGATCCGA ACTCAGGCAC GCTGTTGCGC
AGCCGGACCG GATATTTGCC CGCCAACAGC TTTCGCGCCG ACCCCAATGC GCTGTATTAC
CTGACCGGCG GCGGCAACGA CTTTCTGCAA GGTCGCGTGT TGAGCGCCAG CAGCGCGGGA
CAAGCCGCCA ACCGCCTGGC TGACAGTGCA CTGGCACTGC AACAGGCCGG CGCGCGCTAC
ATCATGGTCT GGCTGTTACC GGACATCGGC CAGACGCCAG CCTTGAGCGG TACGCCTCTG
GCGTCAGCGA CATCAGCCCT CAGCGCCGTG TTCAATCAGC AACTGGTCAG CCGTCTGGCG
CAGATAGATG CACAGGTCAT CCCGCTCAAC GTGCCACTGT TGATATCTGA AACGCTGGCG
GCTCCCGCAC GCTTCGGTTT CGACCCCAAC GAGAATCTGG TCGCCACGTG CTTCAGTGGC
GACAGTTGCA GAGAAAGTGC AGCCAACGGT CGGTCCAGCG CGACGCCTGA TCCGAGCCGG
GTGTTTTTCA ATGACCGCGT CCACCCTACC GAAGCCGGGC AGCGACTGCT GGCCGACTAC
GCCTATTCGC TGCTCTCGGC CCCCTGGGAA ATCAGCCTGC TGCCGGAAAT GGCCAATGGC
ACGTTGCGCA TGCATCAGGA CGAACTGCGC GCGCAATGGC TCAGCGACTG GGGCAACTGG
CAGGGTGTCG GCCAATGGCA GAGCATTATT GCGGCGGGTG GTCAGAAAAT GGATTTCGAC
GCGCAGGACA GCTCAGCCAA TGCTGACGGC CGGGGCTACA ACCTGACCAT TGGCGGCAGC
TACCGTTTCG CCGAACACTG GCGCACGGGC GTCGTTGCGG GTGCTTATCG ACAGAACCTT
GAGGCCGGTG CCAGAGACTC GGACTACAAA CTCAACAGCT ATATCGCTAC GGCCTTTGTG
CAATATCAGG CCAACCACTG GTGGGGCGAC CTTGCGGTGT CAGGCGGCAA GCTGGATTAC
GAAAACGCCG AACGCAAGTT CGCGCTGGGC GTGAGCGAAG GTCAGGAAAA AGGCGACACC
GACGGCGAGT TGTGGGCCGT CAGCGGGCGA GTCGGTTTTG ACATCGCAGG GGCTGCCAGT
CGCTGGCACC TGTCGCCTTT CGTCAGTGCC GACTATGCCC ATATCGACGT GGATGGCTAC
TCGGAAAAAG GCAACCGCTC GACCGCGCTG ACGTTCAGCG ATCAGACGCG CAAGTCGCGT
CGTGCAGGCG TTGGTTTGCA GGGCAAATTC GAAGTGACGC CCACCACGCA ACTGTGGGCA
GAAGTCGCAA GGGAACGGGA GTTCGAGACC GATCAGCAGA ACGTGACGAT GGCCCTCAAC
AGCGTGCAGT CGGTCGATTT CACACTCGAA GGCTACACGC CGCAACGCGA CCTGAACCGG
GCGACTTTCG GCGTCAGCCA GAAACTCACC CAGGACCTGA CGCTGCGCGG CAACTACAAC
TGGCGCAAGA ACGACGACGT GACTCAGCAG GGGGTTAATG TGGCATTGAG TATGAGTTTC
TAG
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| Protein sequence | MTKTSRCWPF AACLLSLACG TATAGPYSTM VVFGDSLADA GQFPDTAGPR GSTLRFTNRV
GPTYQDGSGE VFNLNSSTLI GRMLNVSAGD LAASTSPVNA ALGQADGNNW AVGGYRTDQI
LDSINSQSTV VDPNSGTLLR SRTGYLPANS FRADPNALYY LTGGGNDFLQ GRVLSASSAG
QAANRLADSA LALQQAGARY IMVWLLPDIG QTPALSGTPL ASATSALSAV FNQQLVSRLA
QIDAQVIPLN VPLLISETLA APARFGFDPN ENLVATCFSG DSCRESAANG RSSATPDPSR
VFFNDRVHPT EAGQRLLADY AYSLLSAPWE ISLLPEMANG TLRMHQDELR AQWLSDWGNW
QGVGQWQSII AAGGQKMDFD AQDSSANADG RGYNLTIGGS YRFAEHWRTG VVAGAYRQNL
EAGARDSDYK LNSYIATAFV QYQANHWWGD LAVSGGKLDY ENAERKFALG VSEGQEKGDT
DGELWAVSGR VGFDIAGAAS RWHLSPFVSA DYAHIDVDGY SEKGNRSTAL TFSDQTRKSR
RAGVGLQGKF EVTPTTQLWA EVAREREFET DQQNVTMALN SVQSVDFTLE GYTPQRDLNR
ATFGVSQKLT QDLTLRGNYN WRKNDDVTQQ GVNVALSMSF
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