| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0567 |
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| Symbol | gph-1 |
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| ID | 1182177 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 622769 |
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| End bp | 623569 |
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| Gene Length | 801 bp |
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| Protein Length | 266 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637391934 |
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| Product | phosphoglycolate phosphatase |
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| Protein accession | NP_790414 |
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| Protein GI | 28867795 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0546] Predicted phosphatases |
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| TIGRFAM ID | [TIGR01449] 2-phosphoglycolate phosphatase, prokaryotic
[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTTTGCAG GCAAGCTGCC CAAGCTGATC ATGTTCGATC TGGACGGCAC GCTGGTGGAC
TCGGTCCCCG ATCTTGCCGT CGCCGTGGAC ACCATGCTGG CTGAGCTTGG CCGGCCGACA
GCCGGGCTGG AATCGGTCCG CGCCTGGGTC GGTAACGGCG CGCCGGTGCT GGTGCGTCGT
GCGCTGGCCA ACAACCTTGA CCACAGCGGT GTCGATGAAG CGCTTGCCGA GCGGGGGCTG
GACATTTTCA TGCGCGCCTA CGCTGAAAAG CACGAGTTCA CCGTGGTTTA CCCTGGCGTG
CGCGAAACCC TCAAGTGGCT GCAGAAGATG GGCGTCGAAA TGGCCCTCAT CACCAACAAG
CCGGAACGCT TCGTTGCGCC GCTGCTCGAT GAAATGAAGC TGGGGCGGTT CTTTCGCTGG
ATCATCGGTG GCGACACCAT GCCGCAGAAA AAGCCTGACC CAGCGGCGCT GTTTTTCGTG
ATGAAAATGG CCGGTGTCCC GGCCTCGCAG TCGCTGTTTG TCGGCGACTC GCGCAGTGAC
GTGCAGGCCG CCAAGGCTGC CGGTGTGGCC TGCGTTGCGC TGAGTTATGG CTACAACCAC
GGCAGGCCGA TTGCCGAGGA AAATCCGGCG ATGGTAATAG ATGATCTGCG CAGGCTGATT
CCCGGTTGCC TGGATCTGGA CGCTGAGATA CTGTTGCCCG ACATCAAACG TCCCTCCTCA
AGAGAATCCA TCGTGGTGGT CACTCGCAAA CTCTGGATGA AAGTCATCAA GGCCCTGGCC
CGCTGGCGTT GGCGCGCCTG A
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| Protein sequence | MFAGKLPKLI MFDLDGTLVD SVPDLAVAVD TMLAELGRPT AGLESVRAWV GNGAPVLVRR
ALANNLDHSG VDEALAERGL DIFMRAYAEK HEFTVVYPGV RETLKWLQKM GVEMALITNK
PERFVAPLLD EMKLGRFFRW IIGGDTMPQK KPDPAALFFV MKMAGVPASQ SLFVGDSRSD
VQAAKAAGVA CVALSYGYNH GRPIAEENPA MVIDDLRRLI PGCLDLDAEI LLPDIKRPSS
RESIVVVTRK LWMKVIKALA RWRWRA
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