Gene PSPTO_0566 details

Gene Information

• Locus tag: PSPTO_0566
• Symbol: rpe
• ID: 1182176
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas syringae pv. tomato str. DC3000
• Kingdom: Bacteria
• Replicon accession: NC_004578
• Strand: +
• Start bp: 622080
• End bp: 622754
• Gene Length: 675 bp
• Protein Length: 224 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 637391933
• Product: ribulose-phosphate 3-epimerase
• Protein accession: NP_790413
• Protein GI: 28867794
• COG category: [G] Carbohydrate transport and metabolism
• COG ID: [COG0036] Pentose-5-phosphate-3-epimerase
• TIGRFAM ID: [TIGR01163] ribulose-phosphate 3-epimerase

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAGCCCT TCGTTATTGC CCCATCGATT CTTTCCGCTG ACTTCGCCCG CCTCGGCGAG 
GAAGTCGACA ATGTGCTGTC CAGCGGCGCT GATTTTGTCC ACTTCGATGT CATGGACAAC 
CATTACGTCC CGAACCTGAC CATCGGTCCG ATGGTCTGCA GCGCACTGCG CAAGTACGGC 
GTGACCGCCC CGATTGATGT GCACCTGATG GTCAGCCCGG TGGATCGCAT TATTGGCGAT 
TTCATCGAGG CCGGTGCCAC GTACATCACC TTCCACCCCG AAGCGACCCA GCACATCGAT 
CGCTCGTTGC AGTTGATTCG TGAAGGCGGC TGCAAGGCGG GTCTGGTGTT CAACCCGGCC 
ACGCCCCTGA ACCTGCTGGA ATACGTCATG GACAAGGTCG ACATGATCCT GCTCATGAGC 
GTCAACCCAG GCTTTGGCGG GCAGAAGTTC ATCCCCGGTA CGCTCAACAA GCTGCGCGAA 
GCGCGCGCGC TGATCGATGC CTCGGGCCGT GATATCCGTC TGGAAATCGA CGGCGGCGTC 
AACGTCAATA ACATCCGCGA AATCGCCGCC GCAGGGGCTG ACACCTTCGT CGCCGGCTCG 
GCCATTTTCA ACGCCCCGGA CTACCGTGAA GTGATCGAGA AAATGCGCGC AGAACTGGCG 
TTATCGCGCG CATGA 

 

Protein sequence

MQPFVIAPSI LSADFARLGE EVDNVLSSGA DFVHFDVMDN HYVPNLTIGP MVCSALRKYG 
VTAPIDVHLM VSPVDRIIGD FIEAGATYIT FHPEATQHID RSLQLIREGG CKAGLVFNPA 
TPLNLLEYVM DKVDMILLMS VNPGFGGQKF IPGTLNKLRE ARALIDASGR DIRLEIDGGV 
NVNNIREIAA AGADTFVAGS AIFNAPDYRE VIEKMRAELA LSRA