| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0554 |
|---|
| Symbol | |
|---|
| ID | 1182164 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 607757 |
|---|
| End bp | 610474 |
|---|
| Gene Length | 2718 bp |
|---|
| Protein Length | 905 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637391921 |
|---|
| Product | organic solvent tolerance protein, putative |
|---|
| Protein accession | NP_790401 |
|---|
| Protein GI | 28867782 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1452] Organic solvent tolerance protein OstA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCTC TGGCCACTCA GTTCGTGGTC GCCGCGGAAC AGTATGACTG CTCAGTCTCT
GCTTCGGGTG CCTGGAACTG TGCGCCGAAA TCCACTGCCG CTGCTGTAGA GCTGCCTCCA
CGCCCCGTGC ACAGCACAGC GTCGGTCAGT TCCAACGGTA CGGTGACGTC CGAAAGCAGC
TCTTCGGGTG AGCAGGTTGC GGGTCCGCAA CTGGTTACCG AAGCCAAGGG CAAAGGCTTG
AAGTCGCGTA GTGCTGACTA CAGCCACCTC GATTGGGTTC CTCGCGAAAA GCTCACCGCA
GCGCAACTGG CCGAGACTGG CCCGTATTGC TCGGGTGCCT ACGTCGAGCC GATTCGTCCT
GGCATGGACG ACAAGACGCC GATGAAAGAC GCGCCAATGT TCGTGGGAGC CAAGGCTTCG
CGTTACGAGC AGGAAGCGCA GGTCGCGACG CTGGCTGGCG ATGTGGTACT GCGCCAAGGC
AGCATGCAGG TGCAGGCCCA GGAGGCCGCA CTGCATCAGG CCGAGAACCG TGGCGAGCTG
AACGGCGATG TCCGTCTGCG CGACAACGGT GCGCTGATCG TCGGTGACAA GGCCGAACTG
CAACTCGACA CCGGTGAAGC CCGTGTCGAC AACGCCGAGT ACGTCCTGCA CAAGTCGAAC
ATTCGCGGTA ACGCCCTGTA CGCCAAACGT GCAGAAAACG CGATCATCCG GCTCAAGGAC
GGCACGTACA CCACGTGCGA ACCGAACAGC AACGCCTGGA CGCTCAAAGG CAACAACATC
ACGCTGAACC CGGCCACCGG TTTCGGCACA GCGACCAACG TTACCCTGCG AGTCAAGGAC
ATTCCGGTCC TTTACACGCC ATATATCTAC TTCCCGATCG ACGACCGTCG CCAGTCCGGC
TTCCTGCCGC CGACCATTGC GGCAGGCGGC GATAACGGTT TCACGCTCGT CACCCCGTAC
TACTTCAACC TGGCGCCGAA CTACGACGCC ACGTTGTACC CGCGCTACAT GGCTGATCGC
GGCTTGCTGA TGGAAGGCGA GTTCCGCTAC CTGACCAAAG GCAGCGAAGG CCAGTTCGGC
GGCGCGTACC TGAACGACGA GAATGACGAC CGCAAGCTGC AGTCCGATTA CGACAAGACC
CGCTGGATGA TCAACTGGCA CCACAAGGGC GGCTTGGATA CACGCTGGCT GACCCAGGTT
GATTACACCG ACATCAGCGA TCCGTATTAC TTCCAGGACC TGGAAACCGA TCAGATCGGC
GTCAAAAGAA CTGACTTCCT TAACCAGCAG GGCTCTTTGA CCTACCGCGG CGACAGCTAC
TCGGCAGTGT TCAACGCTCA GGCTTACAAG CTGGCGACTG TTGCGAACGT TACGCCTTAC
AACCGTCTGC CACAGCTGAC CTTGAATGGC ACCTTGCCGT ACAACCCGGA AGGCTTGAAG
TTCGATTATC AGACCGAAGC TGTTCGCTTT GATCGTGATT TGCGCACCGG CACATTTGTT
GATGAAAACG GCAACTTTGA AAGTCGCCTG GACAACAACA TCAGCGGGCT GGACCGTGCC
AACGGCGATC GTCTGAACCT TGCACCGTCC GTCAGCCTGC CGATGAACTG GTCCTATGGC
TTCCTGACAC CCAAGGTCAA GTATGTCTAT ACCCAGTACG ACCTGAGCCT GGACGGTACA
GGCAAAAGTC AACTGGCGGC TTCGGGCGGG ACATTCGACA GCAGCGTAAA CCGCAGCGTG
CCGATTTTCA GCGTGGACAG CGGTCTGTAC TTCGACCGCA ACACCAACTG GTTCGGCAAG
GATTATCGCC AGACGCTAGA ACCTCGCCTG TTCTATCTCT ATGTGCCAGA GAAAGATCAG
ACGGACATTC CGGCATTCGA TACCAGCGAG AGCACGTTCA GCTACTCGTC GCTGTTCCGC
GACAACCGTT TCACCGGCTC TGACCGTATC GGTGACGAGA ACAAGCTGTC GCTGGGCATC
ACCAACCGCT GGATCGAAGA CAACGGCTTT GAACGCCAAC GCTTCGCCAT AGGTCAGGCC
ATATACTTCT CCGACCGTAA AGTACAGCTG CCGGGCGTTT CATTCGCAGA TCGCGACGAT
GCCAAGGCAA ACGTTTCGCC GTACGCACTG GAATACGAGT ACCGCTTCAA CCGCGACTGG
CGCTTCAACT CCGATTTCAA CTGGGATCCG GACAGCAAGA GCACCCGTTC GGGCAGCGCA
ATGTTCCATT ATCAGCCTGA AGCCGAACCC AACAAGATCG TCAACTTCGG CTATCGCTAT
CGCAATGACC AGATTCGTTA CGACGAAAGT ACAGGTCGCT GGATTGTGGG TGGTGGTGAC
TACGGTCGTC CGGGCGATCC CAACTACGTG AAGGACTACT ACAAGATTCA GCAGCACGAT
TTCTCGGTCA TCTGGCCAAT CGTGCCGCAG TGGAGCCTGA TCAGCCGCTG GCAGTATGAC
TACAACCGTG AACGCACCAT CGAAGCTTTC GGCGGGTTCG AGTACGACAA CTGCTGCTGG
AAAATGCGTC TGGTCAACCG TTACTGGATC GACTACGACG AATTCAGCCA GGCAGCGCCT
CAGAACGAGA AAGGCGACCG CGGCATATTC CTACAAATCG TGTTGAAGGG GCTTGGCGGT
GTTACTGGCG CCAAAGTGGA CAGCTTCCTC GACAAAGGCA TCCAAGGTTA TCGTGAACGT
GAAGACCAAG CTTTCTGA
|
|---|
| Protein sequence | MQPLATQFVV AAEQYDCSVS ASGAWNCAPK STAAAVELPP RPVHSTASVS SNGTVTSESS
SSGEQVAGPQ LVTEAKGKGL KSRSADYSHL DWVPREKLTA AQLAETGPYC SGAYVEPIRP
GMDDKTPMKD APMFVGAKAS RYEQEAQVAT LAGDVVLRQG SMQVQAQEAA LHQAENRGEL
NGDVRLRDNG ALIVGDKAEL QLDTGEARVD NAEYVLHKSN IRGNALYAKR AENAIIRLKD
GTYTTCEPNS NAWTLKGNNI TLNPATGFGT ATNVTLRVKD IPVLYTPYIY FPIDDRRQSG
FLPPTIAAGG DNGFTLVTPY YFNLAPNYDA TLYPRYMADR GLLMEGEFRY LTKGSEGQFG
GAYLNDENDD RKLQSDYDKT RWMINWHHKG GLDTRWLTQV DYTDISDPYY FQDLETDQIG
VKRTDFLNQQ GSLTYRGDSY SAVFNAQAYK LATVANVTPY NRLPQLTLNG TLPYNPEGLK
FDYQTEAVRF DRDLRTGTFV DENGNFESRL DNNISGLDRA NGDRLNLAPS VSLPMNWSYG
FLTPKVKYVY TQYDLSLDGT GKSQLAASGG TFDSSVNRSV PIFSVDSGLY FDRNTNWFGK
DYRQTLEPRL FYLYVPEKDQ TDIPAFDTSE STFSYSSLFR DNRFTGSDRI GDENKLSLGI
TNRWIEDNGF ERQRFAIGQA IYFSDRKVQL PGVSFADRDD AKANVSPYAL EYEYRFNRDW
RFNSDFNWDP DSKSTRSGSA MFHYQPEAEP NKIVNFGYRY RNDQIRYDES TGRWIVGGGD
YGRPGDPNYV KDYYKIQQHD FSVIWPIVPQ WSLISRWQYD YNRERTIEAF GGFEYDNCCW
KMRLVNRYWI DYDEFSQAAP QNEKGDRGIF LQIVLKGLGG VTGAKVDSFL DKGIQGYRER
EDQAF
|
|---|
| |