| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0536 |
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| Symbol | |
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| ID | 1182146 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 586100 |
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| End bp | 588589 |
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| Gene Length | 2490 bp |
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| Protein Length | 829 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637391903 |
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| Product | sensory box/GGDEF domain/EAL domain protein |
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| Protein accession | NP_790383 |
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| Protein GI | 28867764 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGGAT TAATGATCGA TATCAGCGAC CGGGAAGCGT TGCGACTGTC AGAAGGCAGA
TTCGCTTCGG TCTTCGCTCA ATGTCCGGAC GCCATGATCA TCGCCAGCCT TATCGATGGG
CACATCATGG ATGCCAATCA GGCATTTGTT GAGCACACAG GGCTTTCCAT CGAAGAAGTC
ATTGGTAAAA CACCTACTGA GCTTGACCTA TGGGCAGTGC CGGGCATTGG CCCAAAAGTG
CTGCAACAGT TACAAACAGG CAACATCCAT AATCTCGAGA TCCCCTTCCG CCGCAAGAAC
GGGCGAACCT TTTCAGGGCT GATGTCTGCG CAACCTTTCG ATCAAGGCTC AACACCGGCA
GTGCTGGTGG TCGTGCGTGA CATCACCGCA CTCAAACAGG CCCAGCAGCA ACTGCAGCTT
TCCGAGGAGA AGTTCGCCAA AGCCTTTCAT GCCGCGCCTG ACGGGCTCGC CATTACTCGC
CAACAGGACG GCATGCTTCT GGAGGTCAAC GAAGGGTTCT GCCGGATTAC GGGTTACAGC
GAACGGCACT GCCTTGAACA TTCCACGTTC GACCTGGGCA TATGGGCTGA TTTAAGCGAG
CGCTCCAGGC TTATCGAGCA GTTGAAGCAG CACGGCGTTG TGCATGGTTT TCGGGCTCGA
CTTCGCAATG TCAATGGCAG TATCCGGGTA TGCGAACTGT CTTCGCACCC GCTTCTCATC
TCGGGCGACG CGTGCCTGCT GACGATTTCG CGGGACATAA CCGAAAGCCA GTTGATGCAG
GAAAAACTGC ACCTGGCCGC CACCGTCTTC GAGAGCACCG CCGAGGGCGT GCTTATCACC
GATACCGACC AGCGAATAAG CGCCGTAAAC CGCGCGTTCA CTGAAATTAC CGGCTACAGC
GAGAGCGAGG CCATCGGCCA GACACCTCGT CTGCTCGCCT CCGGCCAGCA TGACAGCGCA
TTCTACGCCT CGATGTGGCA TCAGCTGACA GCCGAAGGCC ACTGGCAAGG CGAGATCAGC
AACCGACGCA AGAACGGCGA GCTTTATCCG AGCTGGCTGA CCGTCAGCGC CGTACGCAAC
AAAGAGAACC TTCTGACGCA CTTTGTCGCG GTGTTCGCAG ACATCTCCAG CCTCAAACAT
GCCCAGGCGC GCCTCGACTA CCAGGCTCAC CACGACCCGC TGACCGGCCT GCCCAATCGC
ACCCTGTTCG AGAGTCGCTT GCAGTCCGCA TTGCTGCACA GCGAAGAGTC CGGCAGCCTT
GGCGCGGTGC TGTTTCTTGA CCTGGATCGC TTCAAGCACA TCAACGACAG CCTGGGCCAT
CCGGTCGGCG ATTTGCTGCT CAAGGGTATT GCCCACCGCC TCAAGGAAAC CCTGCGCGAC
ATCGACACTG TGGCGCGACT CGGCGGTGAC GAGTTCATCG TTCTGCTGCC CGGCCTGCTG
CAGCCCAGCG ACGCCAAGGC TATCGCCAAC AAGCTGCTGG CCTGCTTCAG TACGCCGTTT
GAAGCCGGCG AGCACGAGTT GTACATCAGC CCCAGCATCG GAAGCTGCGT ATTCCCCACC
GACGGCACCG ACGTGGCGAC GCTGGTCAAA AATGCCGACG CCGCCATGTA CCGCTCCAAG
GCTCAGGGCC GCAATCGGGT CGAAAGCTAC ACCCGCGACC TGACCGAACA GGCCAGCGAG
CGCATTGCGC TTGAGCAGGA GCTGAGAAGA GCACTGGACC GCAACCAGCT GAGCCTGGCT
TACCAGCCCA AAATCAGCCT TCTGACCCAA ACGCTGGTCG GCGCAGAAGC ACTGATACGC
TGGAGCCACC CGACGTTCGG CGAAGTGCCA CCTGAACACT TCATCCCCCT GGCAGAAGAA
AACGGCATGA TCCTGCAGAT TGGCGACTGG GTGCTGGAAC AGGCCTGCCG CCAAATGGGC
GCATGGCGGA AAACCTGCAC ACCATTCGGG CCAATGTCGG TCAACCTGGC CGGCGCCCAA
CTGCGCCAGC CCAATCTGGT CGAGCGCATC GAACAGCTGC TCACCGACAA CGGCCTGGTG
CCGGATTGCC TGCAACTGGA AATCACCGAA AACTTCATCA TGAGCCAGAC ACAGGATGCG
CTGGCCGTGC TGCACAAGCT GAAACAACTC GGCGTGCAAC TGGCCATCGA CGACTTCGGC
ACCGGTTATT CCTCGCTGAG CTACCTCAAG CGCCTGCCAC TGGACATCCT CAAGATCGAC
CAGTCCTTCA TCCGCGGCCT GCCCGAAGAC ACCCACGACG CCGCCATCGT CCGCGCCATC
ATCGCACTGG GCCGCAGCAT GCAACTGACC GTGATCGCCG AAGGCGTCGA GACCCACGAA
CAGCAGCAAT TTCTCAGCGA AGAAGGCTGC GAACAGATCC AGGGCTACAT CATCAGCCTG
CCCCTCCAGC CCGACGAATT CAGCGAGAGA TTCCTTCTTA CGAATCTTTC CGACGTTTCG
GATAGCACAG CCGCGAAACC GCCGTTATAA
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| Protein sequence | MAGLMIDISD REALRLSEGR FASVFAQCPD AMIIASLIDG HIMDANQAFV EHTGLSIEEV
IGKTPTELDL WAVPGIGPKV LQQLQTGNIH NLEIPFRRKN GRTFSGLMSA QPFDQGSTPA
VLVVVRDITA LKQAQQQLQL SEEKFAKAFH AAPDGLAITR QQDGMLLEVN EGFCRITGYS
ERHCLEHSTF DLGIWADLSE RSRLIEQLKQ HGVVHGFRAR LRNVNGSIRV CELSSHPLLI
SGDACLLTIS RDITESQLMQ EKLHLAATVF ESTAEGVLIT DTDQRISAVN RAFTEITGYS
ESEAIGQTPR LLASGQHDSA FYASMWHQLT AEGHWQGEIS NRRKNGELYP SWLTVSAVRN
KENLLTHFVA VFADISSLKH AQARLDYQAH HDPLTGLPNR TLFESRLQSA LLHSEESGSL
GAVLFLDLDR FKHINDSLGH PVGDLLLKGI AHRLKETLRD IDTVARLGGD EFIVLLPGLL
QPSDAKAIAN KLLACFSTPF EAGEHELYIS PSIGSCVFPT DGTDVATLVK NADAAMYRSK
AQGRNRVESY TRDLTEQASE RIALEQELRR ALDRNQLSLA YQPKISLLTQ TLVGAEALIR
WSHPTFGEVP PEHFIPLAEE NGMILQIGDW VLEQACRQMG AWRKTCTPFG PMSVNLAGAQ
LRQPNLVERI EQLLTDNGLV PDCLQLEITE NFIMSQTQDA LAVLHKLKQL GVQLAIDDFG
TGYSSLSYLK RLPLDILKID QSFIRGLPED THDAAIVRAI IALGRSMQLT VIAEGVETHE
QQQFLSEEGC EQIQGYIISL PLQPDEFSER FLLTNLSDVS DSTAAKPPL
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