Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0535 |
Symbol | |
ID | 1182144 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | - |
Start bp | 584780 |
End bp | 586021 |
Gene Length | 1242 bp |
Protein Length | 413 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637391901 |
Product | site-specific recombinase, phage integrase family |
Protein accession | NP_790382 |
Protein GI | 28867763 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGTGGGCCC ACCATACTCA AAGCCGCGCA CTGCGCGGCT TTCGCGTTTC TGGGTGGCTC TGCACAAATA CAGTCCTATG GTCTAAAGGT ACAAAATCGG TACAGTGCTG GTGCGCCAGT ACACCTTTGG AGTCCTTTCA GATGGCAACA CTAGTCAAAA CCCCTTCCGG CACCTGGAAG GCTTTGATCC GCAAAACCGG CTGGCCAACT GTGGCTAAAA CCTTCCGCAC CAAACGCGAT GCGGAGGACT GGTCACGTCG CACCGAAGAC GAAATGGTCA GAGGTGTGTA TATCCAGCGC AGCGGCTCCG AGCGCATGAC GCTGGAGGCG GCCCTAAAGC GCTACTTGAG CGACATCACC CCCACCAAGA AGCCCACCAC TCAGCGTGGC GAAACCTCGA AAGCCAAGAA GCTCATCGAG CATCTGGGCA AATACTCACT GGCTGCGCTC TCCGCTGACA TCATCGCCGG CTATCGCGAC AAGCGCCTGA ACGAGCCCAG CCGTGGTGGG ACCATTAGCA ACAACACAGT GCGCCTCGAA CTGGCCCTGT TGAGCCACTT GTACACCGTA GCGATTCAAG AGTGGGGTTT GGGCCTGACT TTCAACCCAG TGCTGAATAT CCGTAAGCCC AGCCCTGGGG ATGGTCGTGA TCGGAGGCTA TCGCCGGAGG AAGAACGTCT TTTGCTCGCG GCCGTGAATC GACATAGCAA TCCTATGTTG GGCTGGATTG TTTGCATCGC TTTGGAAACG GGCATGCGCT CGTCAGAGAT CTCATCCCTA CGTCGACCTC AAGTGGATTT GGCAAAGCGC GTCATACGTC TCTCCGACAC AAAGAACGAC GGCTCGCGCA CTGTGCCTCT AAGCAAGCGT GCCACCGAAG TATTCAAAGC CGCGATGGAT AACCCGGTGC GACCAATCGA CTGCAATCTG GTGTTCTTCG GCGAGCCTGG AAAGGACGGT AAGCGTCGGC CGTATACCTT CACGAAAATT TGGGGTCAGC TGAAGAAGAA GCTCGACCTA CCTGACTTCA GGTTTCACGA CCTGCGTCAT GAGGCAGTGA GTCGGCTTGT CGAAGGCGGG CTATCTGACC AAGAGGTTTC AGCCATTAGT GGCCACAAGT CGATGCAGAT GCTCAAGCGA TACACCCATC TCAGAGCCGA GGATTTGGTC GCTAGACTCG ACCGAATTGG CTCGGCTCCC CAGACTCAGG GTCGGAACAG ATCCAAAAGT GAAAAAAAAT AA
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Protein sequence | MWAHHTQSRA LRGFRVSGWL CTNTVLWSKG TKSVQCWCAS TPLESFQMAT LVKTPSGTWK ALIRKTGWPT VAKTFRTKRD AEDWSRRTED EMVRGVYIQR SGSERMTLEA ALKRYLSDIT PTKKPTTQRG ETSKAKKLIE HLGKYSLAAL SADIIAGYRD KRLNEPSRGG TISNNTVRLE LALLSHLYTV AIQEWGLGLT FNPVLNIRKP SPGDGRDRRL SPEEERLLLA AVNRHSNPML GWIVCIALET GMRSSEISSL RRPQVDLAKR VIRLSDTKND GSRTVPLSKR ATEVFKAAMD NPVRPIDCNL VFFGEPGKDG KRRPYTFTKI WGQLKKKLDL PDFRFHDLRH EAVSRLVEGG LSDQEVSAIS GHKSMQMLKR YTHLRAEDLV ARLDRIGSAP QTQGRNRSKS EKK
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