Gene PSPTO_0535 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0535 
Symbol 
ID1182144 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp584780 
End bp586021 
Gene Length1242 bp 
Protein Length413 aa 
Translation table11 
GC content56% 
IMG OID637391901 
Productsite-specific recombinase, phage integrase family 
Protein accessionNP_790382 
Protein GI28867763 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTGGGCCC ACCATACTCA AAGCCGCGCA CTGCGCGGCT TTCGCGTTTC TGGGTGGCTC 
TGCACAAATA CAGTCCTATG GTCTAAAGGT ACAAAATCGG TACAGTGCTG GTGCGCCAGT
ACACCTTTGG AGTCCTTTCA GATGGCAACA CTAGTCAAAA CCCCTTCCGG CACCTGGAAG
GCTTTGATCC GCAAAACCGG CTGGCCAACT GTGGCTAAAA CCTTCCGCAC CAAACGCGAT
GCGGAGGACT GGTCACGTCG CACCGAAGAC GAAATGGTCA GAGGTGTGTA TATCCAGCGC
AGCGGCTCCG AGCGCATGAC GCTGGAGGCG GCCCTAAAGC GCTACTTGAG CGACATCACC
CCCACCAAGA AGCCCACCAC TCAGCGTGGC GAAACCTCGA AAGCCAAGAA GCTCATCGAG
CATCTGGGCA AATACTCACT GGCTGCGCTC TCCGCTGACA TCATCGCCGG CTATCGCGAC
AAGCGCCTGA ACGAGCCCAG CCGTGGTGGG ACCATTAGCA ACAACACAGT GCGCCTCGAA
CTGGCCCTGT TGAGCCACTT GTACACCGTA GCGATTCAAG AGTGGGGTTT GGGCCTGACT
TTCAACCCAG TGCTGAATAT CCGTAAGCCC AGCCCTGGGG ATGGTCGTGA TCGGAGGCTA
TCGCCGGAGG AAGAACGTCT TTTGCTCGCG GCCGTGAATC GACATAGCAA TCCTATGTTG
GGCTGGATTG TTTGCATCGC TTTGGAAACG GGCATGCGCT CGTCAGAGAT CTCATCCCTA
CGTCGACCTC AAGTGGATTT GGCAAAGCGC GTCATACGTC TCTCCGACAC AAAGAACGAC
GGCTCGCGCA CTGTGCCTCT AAGCAAGCGT GCCACCGAAG TATTCAAAGC CGCGATGGAT
AACCCGGTGC GACCAATCGA CTGCAATCTG GTGTTCTTCG GCGAGCCTGG AAAGGACGGT
AAGCGTCGGC CGTATACCTT CACGAAAATT TGGGGTCAGC TGAAGAAGAA GCTCGACCTA
CCTGACTTCA GGTTTCACGA CCTGCGTCAT GAGGCAGTGA GTCGGCTTGT CGAAGGCGGG
CTATCTGACC AAGAGGTTTC AGCCATTAGT GGCCACAAGT CGATGCAGAT GCTCAAGCGA
TACACCCATC TCAGAGCCGA GGATTTGGTC GCTAGACTCG ACCGAATTGG CTCGGCTCCC
CAGACTCAGG GTCGGAACAG ATCCAAAAGT GAAAAAAAAT AA
 
Protein sequence
MWAHHTQSRA LRGFRVSGWL CTNTVLWSKG TKSVQCWCAS TPLESFQMAT LVKTPSGTWK 
ALIRKTGWPT VAKTFRTKRD AEDWSRRTED EMVRGVYIQR SGSERMTLEA ALKRYLSDIT
PTKKPTTQRG ETSKAKKLIE HLGKYSLAAL SADIIAGYRD KRLNEPSRGG TISNNTVRLE
LALLSHLYTV AIQEWGLGLT FNPVLNIRKP SPGDGRDRRL SPEEERLLLA AVNRHSNPML
GWIVCIALET GMRSSEISSL RRPQVDLAKR VIRLSDTKND GSRTVPLSKR ATEVFKAAMD
NPVRPIDCNL VFFGEPGKDG KRRPYTFTKI WGQLKKKLDL PDFRFHDLRH EAVSRLVEGG
LSDQEVSAIS GHKSMQMLKR YTHLRAEDLV ARLDRIGSAP QTQGRNRSKS EKK