| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0514 |
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| Symbol | pqqF |
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| ID | 1182123 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 561106 |
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| End bp | 563445 |
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| Gene Length | 2340 bp |
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| Protein Length | 779 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637391881 |
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| Product | coenzyme PQQ synthesis protein F |
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| Protein accession | NP_790362 |
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| Protein GI | 28867743 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1025] Secreted/periplasmic Zn-dependent peptidases, insulinase-like |
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| TIGRFAM ID | [TIGR02110] coenzyme PQQ biosynthesis probable peptidase PqqF |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.506125 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGACGCCC TCATGCCTGC CCCTCAATCC GCTGACCTCA GACGCATCAC GCTGGCCAAC
GGCCTGAGTG TGGCGCTGTG TCACGATTCG CGGCTCAAGC GCAGTGCGGC ATCATTGCGC
GTGGCCGCAG GCAGTCACGA TGCGCCGCTG GCGTGGCCGG GGCTGGCGCA CTTTCTGGAG
CATCTGTTTT TCCTCGGCAC CGAGCGCTTC CAGGCCGGGG AAAACCTGAT GACGTTCGTG
CAGCGTCACG GCGGTCAGGT GAATGCCAGT ACCCGTGAAC GCACCACCGA CTTCTTCTTC
GAACTGCCGC AGACGGCATT CGCTCAAGGG CTGGAGCGGC TGTGCGACAT GCTCGCCCGG
CCGCGCATGA CCGTCGCCGA TCAGCTGCGC GAACGCGAAG TGTTGCACGC CGAGTTCATC
GCCTGGCGTG GCGATGCAAA CGCGCGCGAT CAGTTACGTT TGCTGGCTGC AGTCAATCCA
CAGCACCCGC TGCGCGGCTT TCATGCGGGC AATCGCTACA GCCTCTCGGT GCCCAACCCG
GCCTTTCAAC AGGCGCTGCA AAACTTCTAT CAGCGCTTCT ATCAGGCCGC ACAGATGACC
CTGTGCCTGA GCGGTCCGCA ATCGTTGGCG GAACTGGAAA CGCTGGCTAA TACGCATGGC
GCACTGTTCG CCAGCGGCAC AAAAGTCAGA CAGCACGCCC CTGCGCCGCT GATGAAGCAC
CCAACCAGCC TTGAACACAT CGACGAGCAA AAACACCTGC TGTTCGCCTG CGAGCACCTG
CCCGCGAAAG CTGACGAGGC CGTGGCGTTC CTCTGTCACT GGCTGAATGC CGCGCAGCCG
GGCGGGCTGA TCGCCACATT GATCGAGCGG GGCCTGATCG AGTCGCTTAA CGCAACGCCG
CTGTATCAGT TTGATGGGCA ACTGCTGCTG GATATCGAGC TCAACGCAAA TCGGCCGAGC
GCATCCACGA TAAAATCGCT GCTTTTGAGC TGGCTCCGGT TCTTCAAAAC CCAATGGCCA
GCGCTGATCG AGGAATATCA ACGCCTGGAA CAGCGCCGCC TGCAAATGAG CGGAGCACTG
ACCCTGGCAC ACCATCACTG TCGTGAACTG CCTGCACAGT TGAGTGACCA AGGCGCTGAC
GCATTGCGTG AGCTGCTGGA ACAACTCACA AGCAACGCTC TGATCGGCTC GGCACCAGTG
GATAACCTGG ACAGCACGCT GGCCGAATGG CGCCTGCCAG CGCCCAACCC CTTTCTGGAA
TCCATAGCCG AAGACAGCCC TGAAGCGGCG CTTTACCTGC GTTGGGAATT ACCTTCAGCG
CAGCCGACGC TTTGGCAGAT GCTCAATACC CGGCTCACGC CACTGATCGA GGACGCCCGG
CAAGCCGGTG TAAACCTGAC GTTCAGTGCC TACGGCAACT ACTGGCAGAT ACAGCTGAAC
GGTTTGCGGG CACCGATGGT GGCGGTCATC GAACACGCTC TGCAACGCCT GCGACACGCC
GCACCTGGAC CGCTGACACA CGCCGGGCAG GCCAGTGAAC CGCTGATCCC TGTTCGCCAG
TTGCTCAAGC ATCTTGCTGA TCACTATTTG ATCAGCAAAC AGGCGCAAAC CACGGGTGAT
CTGCACACCG TCTGGAAACA TTCGCGCTGG ATCAGCTTCG CCAGCGGGTT CTGCGCCGCC
AGCCAGTTGC AGTTGAACAC CGCACTGAAC GCCACCCCGG GCACCCGGCA AACAGACGTG
CCCACGCTAC CCGCCATTCG CCTCGGCAAA CGCTGGAGCA GCGAAGCATC GTCCTCGTCC
GAAAACGCCG TGCTGGTATT TTGCCCTGCG CCAACGGCCT CAGTCGAAGA TGAAGCCGCC
TGGCGGCTGC TCGCGCACCT GCTGCAAGCG CCGTTCTACC AGCGGCTGCG CGTCGAGTTG
CAATTGGGGT ACGCGGTGTT CAGCGGCATC AGGCAGATCG CCGGGAGGAC CGGGCTGCTG
TTCGGTGTGC AATCGCCCAC CTGCAGTGCC GATCAGCTTT TTCAGCACAT CGAGGCGTTT
ATCGGCCGTT TGCCGGCGCT CATTCGCACT GCAGACCTGC CCGAGCAAAT CCGGGTGCTG
TCCGCCCAGT TCGACCCCGC AAACATGCCG GATCAGCAAC AGGCAGATAT ACACTGGCAG
GCGTACCTTG CCGGGCATCG GGCGCATCAT TCGCAAGCCC TGCAGCGCGC CCTGTCAAAT
CTGGATACAC ACTCGCTGCT CGCCACCGCC AACCAACTGA TTGACGCTGC AGGCGGCTGG
CTCATCGTAG CCAGCCGCCC TGCCAGCGCG GCCGTCCCGT TATCCTTACC TGAACGGTAA
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| Protein sequence | MDALMPAPQS ADLRRITLAN GLSVALCHDS RLKRSAASLR VAAGSHDAPL AWPGLAHFLE
HLFFLGTERF QAGENLMTFV QRHGGQVNAS TRERTTDFFF ELPQTAFAQG LERLCDMLAR
PRMTVADQLR EREVLHAEFI AWRGDANARD QLRLLAAVNP QHPLRGFHAG NRYSLSVPNP
AFQQALQNFY QRFYQAAQMT LCLSGPQSLA ELETLANTHG ALFASGTKVR QHAPAPLMKH
PTSLEHIDEQ KHLLFACEHL PAKADEAVAF LCHWLNAAQP GGLIATLIER GLIESLNATP
LYQFDGQLLL DIELNANRPS ASTIKSLLLS WLRFFKTQWP ALIEEYQRLE QRRLQMSGAL
TLAHHHCREL PAQLSDQGAD ALRELLEQLT SNALIGSAPV DNLDSTLAEW RLPAPNPFLE
SIAEDSPEAA LYLRWELPSA QPTLWQMLNT RLTPLIEDAR QAGVNLTFSA YGNYWQIQLN
GLRAPMVAVI EHALQRLRHA APGPLTHAGQ ASEPLIPVRQ LLKHLADHYL ISKQAQTTGD
LHTVWKHSRW ISFASGFCAA SQLQLNTALN ATPGTRQTDV PTLPAIRLGK RWSSEASSSS
ENAVLVFCPA PTASVEDEAA WRLLAHLLQA PFYQRLRVEL QLGYAVFSGI RQIAGRTGLL
FGVQSPTCSA DQLFQHIEAF IGRLPALIRT ADLPEQIRVL SAQFDPANMP DQQQADIHWQ
AYLAGHRAHH SQALQRALSN LDTHSLLATA NQLIDAAGGW LIVASRPASA AVPLSLPER
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