| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0501 |
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| Symbol | hopU1 |
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| ID | 1182110 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 548376 |
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| End bp | 549170 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637391869 |
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| Product | type III effector HopU1 |
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| Protein accession | NP_790350 |
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| Protein GI | 28867731 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAATATAA ATCGACAACT GCCTGTATCA GGCTCGGAGC GATTGTTGAC TCCCGACGTG
GGCGTATCTC GCCAGGCTTG TTCCGAAAGG CATTATTCTA CTGGACAGGA TCGGCATGAT
TTTTACCGTT TTGCTGCCAG GCTACATGTG GATGCGCAGT GTTTTGGTCT GTCAATAGAC
GATTTGATGG ATAAGTTTTC TGACAAGCAC TTCAGGGCTG AGCATCCTGA ATACAGGGAT
GTCTATCCGG AGGAATGTTC TGCCATTTAT ATGCATACCG CTCAAGACTA TTCTAGTCAC
CTCGTAAGGG GGGAAATAGG AACGCCGCTG TACCGAGAGG TCAATAATTA TCTTCGACTT
CAACATGAGA ATTCTGGGCG AGAAGCTGAA ATTGATAATC ACGACGAAAA GCTATCGCCT
CACATAAAAA TGCTTTCATC TGCGCTTAAT CGTTTAATGG ATGTCGCCGC TTTTAGAGGA
ACGGTTTATA GAGGCATTCG CGGTGATTTA GATACCATTG CTCGGCTCTA CCATCTATTC
GATACGGGCG GCCGGTACGT AGAGCCCGCT TTCATGAGTA CAACTCGAAT AAAGGACAGT
GCCCAGGTGT TTGAGCCAGG CACGCCAAAC AACATAGCTT TCCAGATAAG CCTAAAAAGA
GGCGCCGACA TTTCGGGATC TTCCCAAGCG CCCTCAGAGG AAGAAATCAT GCTACCCATG
ATGAGTGAGT TCGTCATTGA ACATGCATCC GCTCTTTCCG AAGGAAAGCA TTTATTTGTA
TTAAGTCAGA TTTGA
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| Protein sequence | MNINRQLPVS GSERLLTPDV GVSRQACSER HYSTGQDRHD FYRFAARLHV DAQCFGLSID
DLMDKFSDKH FRAEHPEYRD VYPEECSAIY MHTAQDYSSH LVRGEIGTPL YREVNNYLRL
QHENSGREAE IDNHDEKLSP HIKMLSSALN RLMDVAAFRG TVYRGIRGDL DTIARLYHLF
DTGGRYVEPA FMSTTRIKDS AQVFEPGTPN NIAFQISLKR GADISGSSQA PSEEEIMLPM
MSEFVIEHAS ALSEGKHLFV LSQI
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