| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0483 |
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| Symbol | rarD-1 |
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| ID | 1182092 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 529381 |
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| End bp | 530268 |
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| Gene Length | 888 bp |
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| Protein Length | 295 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637391851 |
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| Product | rarD protein |
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| Protein accession | NP_790332 |
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| Protein GI | 28867713 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2962] Predicted permeases |
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| TIGRFAM ID | [TIGR00688] rarD protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000000325655 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGCTG CCAATCCACG CCGCGGATAC ATTCTGGGCC TGAGTGCTTA CACCATCTGG
GGCCTGTTCC CCCTGTATTT CAAAGCCATT GCCGCCGTTC CAGCCATCGA GATCATCATC
CATCGTGCGC TGTGGTCGGC GCTCTTCGGC TTGATCGTGC TGATGTTCTG GAAACACCCC
GGCTGGTGGC GTGACCTGCG CAACAACCCG CAACGGCTGG CCGTGCTCGC GCTGAGCGGC
ACCCTGATTG CCGCCAACTG GATCGTCTAC GTGTGGGCCG TGAACAACGG CCGCATGCTT
GAGGCAAGCC TTGGGTACTA CATCAACCCG CTGGTCAACG TGTTGCTGGG CATGTTGCTG
CTGGGCGAAC GGCTCAGGCG TCTGCAATGG GTCGCAGTCG TTCTGGCTGC AACGGGCGTC
GCGCAGCAGG TCTGGCACGT TGGCAGCCTG CCGTGGATAT CACTGGCGCT CGCACTGACG
TTCGCTTTCT ACGGCCTGAT CCGCAAAAAA GCCCCGGTCG CCGCCCTGCC CGGCTTGGTC
GTGGAAACCT GGATGCTGGT GCCGCTGGCC CTGATCTGGC TAACGCTCAA CCCGACGGCC
GTCACCGCAC AGGCAGAATT CTGGACCACC ACCCAGGCCA TCTGGCTCGC TGCGGCAGGC
CCGGTGACGC TGATACCGCT GGTGTGCTTC AACGCCGCCG CTCGCCATCT GCCGTTCACG
ACACTGGGTT TCCTGCAATA CATTGCACCC ACTCTGGTCC TGCTGCTGGC CGTTCTGCTG
TACGGCGAAC ACCTGACCAC CAGCACCATC ATCACCTTCG CCTTCATCTG GGCGGGGCTG
GCTGTCTACA GTGTGGATAT CTGGCTAAAA TCCCGCGGCC GCCGCTGA
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| Protein sequence | MQAANPRRGY ILGLSAYTIW GLFPLYFKAI AAVPAIEIII HRALWSALFG LIVLMFWKHP
GWWRDLRNNP QRLAVLALSG TLIAANWIVY VWAVNNGRML EASLGYYINP LVNVLLGMLL
LGERLRRLQW VAVVLAATGV AQQVWHVGSL PWISLALALT FAFYGLIRKK APVAALPGLV
VETWMLVPLA LIWLTLNPTA VTAQAEFWTT TQAIWLAAAG PVTLIPLVCF NAAARHLPFT
TLGFLQYIAP TLVLLLAVLL YGEHLTTSTI ITFAFIWAGL AVYSVDIWLK SRGRR
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