| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0459 |
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| Symbol | soxD-1 |
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| ID | 1182068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 503828 |
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| End bp | 504124 |
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| Gene Length | 297 bp |
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| Protein Length | 98 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637391827 |
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| Product | sarcosine oxidase, delta subunit |
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| Protein accession | NP_790308 |
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| Protein GI | 28867689 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4311] Sarcosine oxidase delta subunit |
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| TIGRFAM ID | [TIGR01374] sarcosine oxidase, delta subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTGCATA TCTTCTGTCC TCACTGTGGC GAGCTGCGCT CCGAAGAGGA ATTCCATCCG
TCCGGCCAGG CGCACATCCC GCGTCCGCTG GACCCCGCTG CCTGCACCGA TGAGCAATGG
GGCGACTACA TGTTCTTCCG CGACAACCCG CGTGGCCTGC ACCACGAGCT GTGGATTCAC
GCTGCCGGTT GCCGTCAGTA CTTCAACATG ACGCGCAACA CGGTGACCTA CGAGATTCTC
GAAACCTATC CGATCGGTAG CAAGCCGCAG TTCACGGATC AGGGAGAAAA GGCATGA
|
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| Protein sequence | MLHIFCPHCG ELRSEEEFHP SGQAHIPRPL DPAACTDEQW GDYMFFRDNP RGLHHELWIH
AAGCRQYFNM TRNTVTYEIL ETYPIGSKPQ FTDQGEKA
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