| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0458 |
|---|
| Symbol | soxA-1 |
|---|
| ID | 1182067 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 500811 |
|---|
| End bp | 503831 |
|---|
| Gene Length | 3021 bp |
|---|
| Protein Length | 1006 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637391826 |
|---|
| Product | sarcosine oxidase, alpha subunit |
|---|
| Protein accession | NP_790307 |
|---|
| Protein GI | 28867688 |
|---|
| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
|---|
| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCAGA GCAATCGCCT GCCCAACGGC GGCCGCATCA ACCGCAGCAA AGTGCTCAAC
TTCACCTTCA ACGGCCAGAC CTATCAGGGC TTTGAAGGCG ACTCGCTGGC GTCCGCGCTG
CTGGCCAATG GCGTTGAGAT CATTGGTCGC AGTTTCAAGT ATTCCCGGCC ACGCGGCATC
TTCGCGGCGG GTTCGGAAGA ACCGAACGCC GTGTTGCAGA TCGGCGCGAC CGAAGCGACG
CAGATCCCCA ACGTGCGCGC CACCCAGCAA GCGCTTTATT CGGGGCTGGT GGCGACCAGC
ACCAACGGCT GGCCGAGCGT AAACACCGAC GTAATGGGCA TTCTGGGCAA GGTCGGCGGC
AAACTGATGC CTCCGGGCTT CTACTACAAA ACCTTCATGT ACCCGCAATC GTTCTGGATG
ACGTACGAAA AGTACATCCG CAAGGCGGCA GGCCTCGGTC GCTCACCGAC CGAGAACGAC
CCGGACAGCT ACGACGCGAT GAACCAGCAC TGTGATGTGC TGATCGTCGG CGCAGGCCCG
GCTGGTCTGG CCGCCGCACT GGCAGCGAGC CGCAGCGGCG CCCGAGTGAT CATCGCCGAT
GAACAGGAAG AATTCGGCGG CAGTCTGCTC GACAGCCGTG AAAGCCTGGA TGGCAAACCC
GCTGCCGAGT GGGTTGCAAC AGTAGTTGCC GAGCTGAAAA GCCTGCGCAA CGTGACACTG
CTGCCACGCG CCACGGTCAA CGGTTATCAC GATCACAATT TTCTGACCAT CCACGAGCGT
CTGACCGACC ACCTCGGTGA TCGCGCGCCC ATCGGCATGG TTCGCCAGCG CATGCACCGG
GTGCGCGCCA AACGTGTGGT GCTGGCTGCC GGCACGCACG AGCGGCCGCT GGTCTACGGC
AACAACGATG TGCCGGGCAA CATGCTTGCG GGTGCAATCT CGACGTATGT ACGTCGTTAC
GGCGTCGCGC CGGGCAAAAA ACTCGTGCTG TCCACCAACA ACGACCACGC CTACCGCGTC
GCGCTGGACT GGCTCGACGC CAGCCTGCAC GTGGTGGCGA TTGCCGATGC GCGGCACAAT
CCACGCGGCC CGCTGGTTGA AGAGGCTCGC GCCAAAGGCA TTCGTATTCT GACCGGCAGC
GCCGTGATCG AAGCGCGTGG CAGCAAGCGG GTGAGCGCTG CACGCGTTGC CGCCATCGAC
CTCAAAACGC ACAGCGTCAC CAGCCCCGGC GAGTGGCTTG AGTGCGATCT GGTGGCAAGT
TCCGGCGGTT ACAGCCCCAT CGTCCATCTG GCCTCGCACC TGGGCGGCAA GCCGGTCTGG
CGTGAAGACA TCCTCGGTTT CGTGCCGGGC GAAGCGCCGC AGAAACGTAT CTGTGTGGGC
GGCGTGAACG GCGTCTACAG CCTGGCAGAC AGCCTGGCCG ATGGTTTCGA GGGTGGCGTG
CGCGCTGCCA GCGAAGCAGG CTTCAAGATT GTCGAGGGCG TGATGCCCAA AGCCCTCAGC
CGCGCCGAAG AACCGACGCT GGCGCTGTTC CAGGTGCCCC ATGAAAAAGG CACTGCACGG
GCGCCCAAGC AATTCGTCGA TTTCCAGAAC GACGTGACCG CCGCCGCCAT TGAACTGGCG
ACCCGTGAGG GTTTCGAGTC GGTCGAGCAC GTCAAACGCT ACACCGCGCT GGGCTTCGGC
ACCGATCAGG GCAAGCTGGG CAACGTCAAC GGGCTGGCCA TCGCAGCCCG CTCGTTGAAC
GTGTCGATCC CGGAAATGGG CACCACCATG TTCCGCCCCA ACTACACACC GGTCACCTTC
GGCGCGATTG CCGGGCGTCA TTGCAAGCAC ATCTTCGAGC CGGTGCGCTT CACCGCGCTG
CATGCCTGGC ACATCAGAAA CGGTGCCGAA TTCGAAGACG TCGGCCAGTG GAAACGCCCG
TGGTACTTCC CTAAAAACGG TGAAGACCTG CCCGCTGCCG TGGCGCGTGA ATGCAAGGCG
GTGCGTGACA GCGTCGGCCT GCTGGACGCC TCGACGCTGG GCAAGATCGA CATTCAAGGG
CCGGATGCGC GCGAATTCCT CAACCGCATC TATACCAACG CCTGGACCAA ACTGGACGTG
GGCAAGGCCC GTTACGGCCT GATGTGCAAG GAAGACGGCA TGGTCTTCGA TGACGGTGTG
ACTGCCTGCC TCGCCGACAA CCACTTCCTG ATGACCACCA CGACGGGCGG TGCTGCACGC
GTCCTGCAAT GGCTGGAAAT CTATCAGCAA ACCGAATGGC CGGACCTGAA AGTGTATTTC
ACCTCAGTGA CCGATCACTG GGCGACCCTG ACGCTGTCTG GCCCCAACAG CCGCAAGCTG
CTCAGCGAAG TGACCGATAT CGACCTGGGC CGTGAAGCGT TCCCGTTCAT GACCTGGAAA
GAAGGCTTGG TCGCAGGCGT GCCGGCGCGG GTGTTCCGTA TCTCGTTTAC CGGCGAGCTG
TCCTATGAGG TCAACATTCA GGCCGACTAC GCGATGGGTG TTCTGGAAAA GATCGCCGAG
GCCGGCAAGC AGTACAACCT GACGCCTTAT GGCACTGAAA CCATGCACGT ACTGCGCGCC
GAAAAGGGTT TCATCATCGT CGGTCAAGAC ACCGACGGCT CGATGACCCC GGACGATCTG
AACATGGGCT GGTGTGTCGG GCGGACCAAA CCGTTCTCGT GGATTGGCTG GCGCGGCATG
AACCGCGAAG ACTGTGTGCG TGAACAACGC AAGCAATTGG TCGGCCTCAA ACCCATAGAC
TCGACCCAAT GGCTACCGGA AGGCGCTCAG TTAGTGTTCG ACACCAGGCA GGCGATCCCG
ATGAGCATGG TCGGCCACGT GACCTCCAGC TACGCGCACA ACTCGCTGGG CTATTCGTTC
GCGATGGGCG TGGTCAAAGG CGGCCTGAAC CGGATCGGCG AGCACGTGTT CGCGCCGCTG
GCCGATGGCA GCGTGATCGA AGCCGAGATC GTCTCGTCGG TGTTCTTCGA CCCGAAGGGC
GAGCGTCAGA ATGTTGAGTA A
|
|---|
| Protein sequence | MSQSNRLPNG GRINRSKVLN FTFNGQTYQG FEGDSLASAL LANGVEIIGR SFKYSRPRGI
FAAGSEEPNA VLQIGATEAT QIPNVRATQQ ALYSGLVATS TNGWPSVNTD VMGILGKVGG
KLMPPGFYYK TFMYPQSFWM TYEKYIRKAA GLGRSPTEND PDSYDAMNQH CDVLIVGAGP
AGLAAALAAS RSGARVIIAD EQEEFGGSLL DSRESLDGKP AAEWVATVVA ELKSLRNVTL
LPRATVNGYH DHNFLTIHER LTDHLGDRAP IGMVRQRMHR VRAKRVVLAA GTHERPLVYG
NNDVPGNMLA GAISTYVRRY GVAPGKKLVL STNNDHAYRV ALDWLDASLH VVAIADARHN
PRGPLVEEAR AKGIRILTGS AVIEARGSKR VSAARVAAID LKTHSVTSPG EWLECDLVAS
SGGYSPIVHL ASHLGGKPVW REDILGFVPG EAPQKRICVG GVNGVYSLAD SLADGFEGGV
RAASEAGFKI VEGVMPKALS RAEEPTLALF QVPHEKGTAR APKQFVDFQN DVTAAAIELA
TREGFESVEH VKRYTALGFG TDQGKLGNVN GLAIAARSLN VSIPEMGTTM FRPNYTPVTF
GAIAGRHCKH IFEPVRFTAL HAWHIRNGAE FEDVGQWKRP WYFPKNGEDL PAAVARECKA
VRDSVGLLDA STLGKIDIQG PDAREFLNRI YTNAWTKLDV GKARYGLMCK EDGMVFDDGV
TACLADNHFL MTTTTGGAAR VLQWLEIYQQ TEWPDLKVYF TSVTDHWATL TLSGPNSRKL
LSEVTDIDLG REAFPFMTWK EGLVAGVPAR VFRISFTGEL SYEVNIQADY AMGVLEKIAE
AGKQYNLTPY GTETMHVLRA EKGFIIVGQD TDGSMTPDDL NMGWCVGRTK PFSWIGWRGM
NREDCVREQR KQLVGLKPID STQWLPEGAQ LVFDTRQAIP MSMVGHVTSS YAHNSLGYSF
AMGVVKGGLN RIGEHVFAPL ADGSVIEAEI VSSVFFDPKG ERQNVE
|
|---|
| |