| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0430 |
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| Symbol | rpoH |
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| ID | 1182039 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | + |
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| Start bp | 475778 |
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| End bp | 476632 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637391798 |
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| Product | RNA polymerase sigma-32 factor |
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| Protein accession | NP_790279 |
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| Protein GI | 28867660 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCACTT CTTTGCAACC TGCTTATGCC TTAGTCCCGG GTGCAAACCT TGAGGCCTAT
GTGCACACGG TCAACAGCAT TCCCTTGCTG ACGCCGGAGC GGGAGCGTGA ACTGGCTGAG
AGTCTCTACT ATGAGCAGGA TCTGGACGCG GCCCGACAAA TGGTCCTCGC TCACCTGCGA
TTCGTCGTGC ACATCGCGCG CAGTTATTCG GGTTACGGTC TGGCTCAGGC TGACCTGATC
CAAGAAGGCA ACGTCGGCCT TATGAAGGCT GTGAAGCGCT TCAACCCGGA AATGGGCGTG
CGTCTGGTGT CGTTTGCAGT GCACTGGATC AAAGCCGAAA TTCACGAGTT CATCCTGCGC
AACTGGCGCA TCGTCAAGGT CGCCACGACC AAGGCGCAAC GCAAGCTGTT CTTTAATCTG
CGCAGCCAGA AGAAGCGTCT GGCCTGGCTG AACAATGACG AGGTGCATCG CGTCGCAGAA
AGCCTGGGTG TCGAGCCGCG CGAAGTTCGC GAAATGGAAA GCCGCCTGAC CGGTCACGAC
ATGGCCTTCG ACCCGGCAGC CGAGGCGGAT GACGACAGCG CGTTCCAGTC GCCTGCCAAC
TACCTGGAAG ACCACCGGTA CGACCCGGCG CGTCAACTGG AAGATGCAGA CTGGACCGAC
AACTCCACCG CCAACCTGCA TCAGGCGCTG GACGTGCTGG ACGAACGCAG CCGCGACATC
CTCTACCAGC GCTGGCTGGC CGAAGAAAAA GCCACGCTGC ACGACCTGGC GCAGAAGTAC
AACGTCTCCG CCGAGCGCAT TCGTCAGTTG GAAAAAAGCG CGATGAACAA GCTCAAGACG
TCGATCGCTG CGTAA
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| Protein sequence | MTTSLQPAYA LVPGANLEAY VHTVNSIPLL TPERERELAE SLYYEQDLDA ARQMVLAHLR
FVVHIARSYS GYGLAQADLI QEGNVGLMKA VKRFNPEMGV RLVSFAVHWI KAEIHEFILR
NWRIVKVATT KAQRKLFFNL RSQKKRLAWL NNDEVHRVAE SLGVEPREVR EMESRLTGHD
MAFDPAAEAD DDSAFQSPAN YLEDHRYDPA RQLEDADWTD NSTANLHQAL DVLDERSRDI
LYQRWLAEEK ATLHDLAQKY NVSAERIRQL EKSAMNKLKT SIAA
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