| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0421 |
|---|
| Symbol | |
|---|
| ID | 1182030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | - |
|---|
| Start bp | 466742 |
|---|
| End bp | 467755 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637391789 |
|---|
| Product | hydrolase, alpha/beta fold family |
|---|
| Protein accession | NP_790270 |
|---|
| Protein GI | 28867651 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0429] Predicted hydrolase of the alpha/beta-hydrolase fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCCCCATG CAAACCCGTT CGTCCCGGCC GTCGGCATGG GCAATCCGCA CCTGCAGACG
CTTTGGGGCC CGCTGGTGCG CAGGCCAACG CTGCTGGCGC GTTCTCGCGA GCGGTTGTGG
TTGAAGGACG GGGATTTTCT GGACATGGAC TGGCACGGGC CGAACGACGC CGATGCGCCA
TTGGTGCTGG TGCTGCACGG CCTGACCGGG TCGTCCAACT CGCCGTATGT AGCCGGCCTG
CAAAAGGCCA TGGCGGCGAA GGGCTGGGCC AGTGTGGCGC TGAACTGGCG CGGCTGCTCG
GGGGAGCCCA ATCTGCTGTC GCGCAGTTAT CACTCCGGGG CGAGCGAAGA CCTCGCCGAA
GTGATCGCTC ATTTACGCTT GCTGCGCCCA CTGGCTGCGC TGTATGCCGT GGGGTATTCA
CTGGGCGGCA ATGTGTTGCT CAAGTATCTG GGCGAGTCAG GCAAGCACAG CGAGCTGCTG
GGTGCGGTAG CGGTGTCTGT CCCTTTTCGT CTGGACGAGT GCGCCAACCG TATCGGCCAG
GGGTTTTCCA AGGTCTATCA ACGGCACTTC ATGCGCGAAA TGCTGACGTA CATCCGCGAC
AAGCAACAGC GCTTTCAACA TGAAGGGCTG ACCGAAGGGC TCGCTGAACT GTCTGCCCTG
GGCTCGCTGG AGAACATGCG AACGTTCTGG GACTTCGATG GCCGGGTGAC GGCCCCTTTG
CACGGCTTCG TCGATGCCAC GGATTATTAC CGCAGGGCAT CGAGTCGCTA TTACCTGGGC
CAGATTGAAA CGCCGACGCT GATTATCCAG TCTCGCGACG ATCCGTTCGT TTTCCCCCAC
AGCCTGCCCG AGCCCGGCGA ACTGTCAGCC TGCACCGAAT TTGAACTGCA TGCCAAAGGC
GGGCACGTCG GTTTTGTCGA CGGCTCGTTG CGCAACCCGA CTTATTACCT CGAGCGGCGT
ATCCCGTCAT GGCTGAGCGC CGCGCAGGAA CGTGAAAGCG CCCGCTCAAG CTGA
|
|---|
| Protein sequence | MPHANPFVPA VGMGNPHLQT LWGPLVRRPT LLARSRERLW LKDGDFLDMD WHGPNDADAP
LVLVLHGLTG SSNSPYVAGL QKAMAAKGWA SVALNWRGCS GEPNLLSRSY HSGASEDLAE
VIAHLRLLRP LAALYAVGYS LGGNVLLKYL GESGKHSELL GAVAVSVPFR LDECANRIGQ
GFSKVYQRHF MREMLTYIRD KQQRFQHEGL TEGLAELSAL GSLENMRTFW DFDGRVTAPL
HGFVDATDYY RRASSRYYLG QIETPTLIIQ SRDDPFVFPH SLPEPGELSA CTEFELHAKG
GHVGFVDGSL RNPTYYLERR IPSWLSAAQE RESARSS
|
|---|
| |