Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PSPTO_0419 |
Symbol | |
ID | 1182028 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
Kingdom | Bacteria |
Replicon accession | NC_004578 |
Strand | + |
Start bp | 465161 |
End bp | 465823 |
Gene Length | 663 bp |
Protein Length | 220 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637391787 |
Product | transcriptional reguator, TetR family |
Protein accession | NP_790268 |
Protein GI | 28867649 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCACCCC GTACCAAAAC CCGTGAACGT ATTGTGCAAG CCAGCCTTGA GCTGTTCAAT CAGCAAGGCG AGCGTTGCAT AACCACCAAT CACATTGCTG CGCACATGGA GATATCGCCC GGCAATCTCT ATTATCACTT TGCCAACAAG CAGGTAATCA TTGCCGAGCT GTTCACCCAG TACGAGACGC TGGTGGGCAG TTTTCTGACG TTGCGCACAG ACCGCCTGCC GACTATCGAG GACAAGCGCG ATTACTTTCT GGCAATGATC GACGCCATGT GGCGCTATCG TTTTCTGCAC CAGGACCTTG AACACCTGCT GACGTCGGAT GCGGAGCTTG CCAGGCGCTA CCGACGTTTT TCGTACCGTT GCCTGATGCA GGCGATGAAC ATTTACCGGG GGTTCATCAA GGCGGGCATC CTGCAGATGG ATGAGTCGCA GATCGAGTGG ACCAGCCTCA ATACCTGGAT TGTGCTGACG TCGTGGGTGC GGTTTTTGTG CACTAATCGG GAAAACAATG CCGAGTTGAA CGAATCAGCC ATCCGGCGTG GTGTCTATCA GGTGCTTATG CTCGAATCGG TCTTTGTCGC GCCTCAGGCT CGCGAAGCGT TCGATGCGTT ATGTGAAACG TTTCATTCGT CGTTGCCAGA GGCTCTGGCC TGA
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Protein sequence | MAPRTKTRER IVQASLELFN QQGERCITTN HIAAHMEISP GNLYYHFANK QVIIAELFTQ YETLVGSFLT LRTDRLPTIE DKRDYFLAMI DAMWRYRFLH QDLEHLLTSD AELARRYRRF SYRCLMQAMN IYRGFIKAGI LQMDESQIEW TSLNTWIVLT SWVRFLCTNR ENNAELNESA IRRGVYQVLM LESVFVAPQA REAFDALCET FHSSLPEALA
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