Gene PSPTO_0419 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPSPTO_0419 
Symbol 
ID1182028 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas syringae pv. tomato str. DC3000 
KingdomBacteria 
Replicon accessionNC_004578 
Strand
Start bp465161 
End bp465823 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content54% 
IMG OID637391787 
Producttranscriptional reguator, TetR family 
Protein accessionNP_790268 
Protein GI28867649 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCACCCC GTACCAAAAC CCGTGAACGT ATTGTGCAAG CCAGCCTTGA GCTGTTCAAT 
CAGCAAGGCG AGCGTTGCAT AACCACCAAT CACATTGCTG CGCACATGGA GATATCGCCC
GGCAATCTCT ATTATCACTT TGCCAACAAG CAGGTAATCA TTGCCGAGCT GTTCACCCAG
TACGAGACGC TGGTGGGCAG TTTTCTGACG TTGCGCACAG ACCGCCTGCC GACTATCGAG
GACAAGCGCG ATTACTTTCT GGCAATGATC GACGCCATGT GGCGCTATCG TTTTCTGCAC
CAGGACCTTG AACACCTGCT GACGTCGGAT GCGGAGCTTG CCAGGCGCTA CCGACGTTTT
TCGTACCGTT GCCTGATGCA GGCGATGAAC ATTTACCGGG GGTTCATCAA GGCGGGCATC
CTGCAGATGG ATGAGTCGCA GATCGAGTGG ACCAGCCTCA ATACCTGGAT TGTGCTGACG
TCGTGGGTGC GGTTTTTGTG CACTAATCGG GAAAACAATG CCGAGTTGAA CGAATCAGCC
ATCCGGCGTG GTGTCTATCA GGTGCTTATG CTCGAATCGG TCTTTGTCGC GCCTCAGGCT
CGCGAAGCGT TCGATGCGTT ATGTGAAACG TTTCATTCGT CGTTGCCAGA GGCTCTGGCC
TGA
 
Protein sequence
MAPRTKTRER IVQASLELFN QQGERCITTN HIAAHMEISP GNLYYHFANK QVIIAELFTQ 
YETLVGSFLT LRTDRLPTIE DKRDYFLAMI DAMWRYRFLH QDLEHLLTSD AELARRYRRF
SYRCLMQAMN IYRGFIKAGI LQMDESQIEW TSLNTWIVLT SWVRFLCTNR ENNAELNESA
IRRGVYQVLM LESVFVAPQA REAFDALCET FHSSLPEALA