| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0406 |
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| Symbol | |
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| ID | 1182015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004578 |
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| Strand | - |
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| Start bp | 449550 |
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| End bp | 452243 |
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| Gene Length | 2694 bp |
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| Protein Length | 897 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637391774 |
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| Product | sensory box/GGDEF domain/EAL domain protein |
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| Protein accession | NP_790255 |
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| Protein GI | 28867636 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGCC AAACCGATGC TGCCGGTAGA TCCGCAGCCG AGGTAGTGAC GCAATTGCCG
GTGCCATCGC GCCTGGGCAT GCTGCGTTTC GAGCGGCTGA ATGAAGCCAA TTGGGCGCTG
TTGTTTCTCG ACCCGAACTG TGAAAAACAG CTCGGGCTGC CGGCTGTTGA CCTTTGCGCC
CTGATTGGAT CCCCTTACGC CAGCCTCATG GAGCCGCAAG CACGTTATCA ACTGCACGAT
GACATCCAAC TGCAACTGGC CTCGTCTCCG AACTACCTGA TCCGCTATAC GCTGCACAGT
CCTAAAGGCC CGCTTGGCCT GCTCGAAATC GGCGAAGCCT ACAAACAACA CAATCGTCAT
TTGCTGCGCG GTTATTTCAT GATCGTGGAA GACCTTGTCA CCGATGGCGA ATCAGTCACT
GACTCTGACC TGGAAACCCG CAACTCACGG CTGCAGATTG CCCTGGAACT CAACCAGCGT
GCCCAGCGTG ACCAGTTTGC ACACCTTGAA CGAGTGCGCG CCCAGCAAGA CCTTATCCTG
CGCCTGACCC GCCACCGTTA CACCACGGCC AATACCCTGC TGGAAGCGGC AGAGCTGATT
ACCAGAAGCG CGTGCGACAT CTACGATGTC GATCACGCCA GCATCTGGAA CCTGAACGAC
AAGCGTCTCG AGCCGATCAC CGACTATCGT CGGGAAAGTG GCGACTACCA GACCCGTACG
GCGATTGACA TCAGCGCCTA CCCTACTTAT CTGCAAGCCC TGAACACCAG CAGGGCGATT
GACGCCAGCA ATATCCAGAC AGACCCGCGC ACCCGGGAAA TGGCGATAAG CCTGAGACCT
GGAGAGACGC GCGCGGTCCT GGACGCCAGT ATCCGTATCG ACGGGCAAGT CATTGGTGTG
CTCTGCCTGG AGCAGTCGGG CTCGACGCGT GAATGGCAGT CCGACGAAAT CGCGTTTGCT
GGCGAGCTGG CCGACCAGTT CGCTCAGGTC ATCAACAACC ATAACCGCCG GGCCGCGACC
AACGCGTTGC ACCTGTTCCA GCGCGCCGTC GAACAAAGCG CCAACGCCTT TTTGCTGGTC
AATTGCAATG GCGTGGTCGA GTACGTCAAC CCAAGCTTCA CGGCGATCAC TCAATACAGC
TCCGAGGAAG TCTCCGGCAA CAAGCTGTCG GAGCTGCCCG CGCTGGAAAA CCTCAACCAG
TTGCTGCTCG AGGCCAACTC CAGCCTGACC AGCAGTAACA GCTGGCAGGG CGAATTCAAG
AGCCGCCGCA AGAATCTCGA ACCCTACTGG GGTCAGTTGT CGATTTCCAA GGTATACGGC
GACAACCGCG AGCTGACGCA CTACATCGGC ATTTATGAAG ACATCACTCA AAGCAAGCTT
GCCCAGCAGC GTATCGAGCG CCTGGCGTAC ACCGACAACC TGACCAATCT GGGCAACCGC
CCGGCCTTCA TCCGCAATCT GGACGAACGC TTTGCCCGTG ACACCGACAC GCCGATGAGC
CTGTTGCTGG TCGACATCGA CAACTTCAAG CGCATCAACG ACAGCCTCGG CCACCAGACC
GGCGACAAGT TGCTGATCAG CCTCGCACGC CGCCTGCGCA ACACACTGAG CCCGACCGAC
GTGCTGGCGC GCTTTGCCAG TAACGAATTC GCGGTGCTAC TGGACAACAC CGGTCAGGAA
GCCGGGCAGG CCACCGCCAG CCAGGTGCTG GCGACGCTGG ACAAGCCGAT GTTCGTAGAT
AACCAGTTGA TCAGTGTGAC AGGCTCCGTG GGCCTGGCCT GCGCGCCATT GCACGGTCGT
GACCCGCAAA CCCTGATGAA AAACGCCGGG CTGGCCCTGC ACAAGGCCAA GGCCAACGGC
AAACATCAGG TTCAGGTGTT CACCGAAGCG CTGAATGCCG AGGCCAGCTA CAAGCTGTTC
GTCGAGAACA ACCTGCGCCG CGCGCTGACC CAGAATGAGC TGGAAGTGTT TTATCAGCCC
AAGCTGTGCC TGTTGACAGG CCGATTGCTG GGTATGGAAG CGCTGCTGCG CTGGAATCAT
CCTGAAAAAG GCATGATCCG TCCGGACCAG TTCATCAGCG TGGCTGAAGA AACCGGGCTG
ATCATTCCGA TCGGCAAATG GGTCGCCCGG CAGTCCTGCC GCATGAGCAA GGACCTGACC
GCTGCAGGCT TCGGTAACCT GCAAGTAGCG ATCAACGTAT CGCCCAAGCA GTTTTCCGAC
CCGGAACTGG TGTCCTCGAT TGCCGCCATC CTCAAAGAGG AACAGCTCGA CCCGTCGCTG
CTGGAACTTG AGCTGACCGA AGGTCTGCTG CTGGAAGCCA CAGAAGATAC TCGCCAGCAA
CTCGACTCGC TGAAGAAGCT CGGCCTGTCG CTGGCGATGG ATGACTTCGG CACCGGTTAC
TCATCGTTCA GCTACCTGAA GAAATTCCCC ATCGATGTGA TCAAGATCGA TCGCAGCTTC
ATCCGCGACA TTCCGGACGA TGAAGACGAC ATGGAAATCA CCTCGGCGGT AATCGCCATG
GCTCACAACC TCAAGCTCAA AGTGGTCGCC GAAGGCATTG AAACCGCAGC CCAACTGGCG
TTTTTACGTC GCCATCGTTG CGATGTCGGC CAGGGTTACC TGTTCGACAG GCCCATCCCC
GGCGAAGAGC TGATCGAAAA ACTGACGCGT TACCCTCGTC GCCCGTCTGC CTGA
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| Protein sequence | MKSQTDAAGR SAAEVVTQLP VPSRLGMLRF ERLNEANWAL LFLDPNCEKQ LGLPAVDLCA
LIGSPYASLM EPQARYQLHD DIQLQLASSP NYLIRYTLHS PKGPLGLLEI GEAYKQHNRH
LLRGYFMIVE DLVTDGESVT DSDLETRNSR LQIALELNQR AQRDQFAHLE RVRAQQDLIL
RLTRHRYTTA NTLLEAAELI TRSACDIYDV DHASIWNLND KRLEPITDYR RESGDYQTRT
AIDISAYPTY LQALNTSRAI DASNIQTDPR TREMAISLRP GETRAVLDAS IRIDGQVIGV
LCLEQSGSTR EWQSDEIAFA GELADQFAQV INNHNRRAAT NALHLFQRAV EQSANAFLLV
NCNGVVEYVN PSFTAITQYS SEEVSGNKLS ELPALENLNQ LLLEANSSLT SSNSWQGEFK
SRRKNLEPYW GQLSISKVYG DNRELTHYIG IYEDITQSKL AQQRIERLAY TDNLTNLGNR
PAFIRNLDER FARDTDTPMS LLLVDIDNFK RINDSLGHQT GDKLLISLAR RLRNTLSPTD
VLARFASNEF AVLLDNTGQE AGQATASQVL ATLDKPMFVD NQLISVTGSV GLACAPLHGR
DPQTLMKNAG LALHKAKANG KHQVQVFTEA LNAEASYKLF VENNLRRALT QNELEVFYQP
KLCLLTGRLL GMEALLRWNH PEKGMIRPDQ FISVAEETGL IIPIGKWVAR QSCRMSKDLT
AAGFGNLQVA INVSPKQFSD PELVSSIAAI LKEEQLDPSL LELELTEGLL LEATEDTRQQ
LDSLKKLGLS LAMDDFGTGY SSFSYLKKFP IDVIKIDRSF IRDIPDDEDD MEITSAVIAM
AHNLKLKVVA EGIETAAQLA FLRRHRCDVG QGYLFDRPIP GEELIEKLTR YPRRPSA
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