| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PSPTO_0394 |
|---|
| Symbol | |
|---|
| ID | 1182003 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas syringae pv. tomato str. DC3000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004578 |
|---|
| Strand | + |
|---|
| Start bp | 433493 |
|---|
| End bp | 434470 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637391762 |
|---|
| Product | renal dipeptidase family protein |
|---|
| Protein accession | NP_790243 |
|---|
| Protein GI | 28867624 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2355] Zn-dependent dipeptidase, microsomal dipeptidase homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCCAG CCGAACTGCA CGCCGACAGC ATCGTTATTG ACGGGCTGAT CATCGCCAAG
TGGAACCGCG AGCTGTTTGA AGACATGCGC AAGGGCGGCC TGACCATGGC CAACTGCACC
GTATCGGTAT GGGAAGGCTT TCAAGCCACT ATCAACAGCA TCTGTACCAG CCAGAAACTG
ATGCGCGAGA ACAGCGACCT GGTCATGCCG GTGCACACCA CCGCCGACAT CCGCAAGGCC
AAGGAGCTGG GCAAGACCGG CATCCTCTTC GGCTTCCAGA ATGCGCATGC CTACGAAGAC
CAGATCGGCT ACGTCGAGAT CTTCAAGCAG CTCGGCGTCG GCATCGTGCA GATGTGCTAC
AACACGCAGA ACCTGGTCGG CACCGGGTGT TACGAACGCG ACGGTGGCCT GTCGGGTTTC
GGCCGCGAAA TCGTCGCTGA AATGAACCGC GTCGGGGTGA TGTGCGACCT GTCCCACGTA
GGGTCGAAAA CCTCTGAAGA AGTCATTCTC GAATCGAAGA AACCAGTCTG TTATTCCCAC
TGCCTGCCTT CCGGCCTCAA AGAGCACCCG CGCAACAAAT CCGACGCTGA ACTGAAGTTT
ATTGCCGACC ACGGCGGCTT TGTCGGCGTG ACCATGTTCG CGCCGTTTCT GGCCAAGGGC
ATCGAGTCGA CCATCGACGA TTACGCCGAA GCCATCGAAT ACGTGATGAA CATCGTGGGC
GAGGATGCCA TCGGTATCGG CACCGATTTC ACCCAGGGCC ACGGTCAGGA CTTTTTTGAA
TACCTGACCC ATGACAAGGG CTACGCCCGC CGCCTGACCA GCTTCGGCAA GATCATCAAC
CCGCTGGGCA TCCGCACCGT GGGCGAGTTC CCCAACCTCA CTGAAACCCT GCTCAGGCGC
GGTCACCCCG AGCGCGTGGT GCGCAAGATC ATGGGCGAGA ACTGGGTAAA CGTGCTGGCG
GACGTCTGGG GCGAGTAA
|
|---|
| Protein sequence | MSPAELHADS IVIDGLIIAK WNRELFEDMR KGGLTMANCT VSVWEGFQAT INSICTSQKL
MRENSDLVMP VHTTADIRKA KELGKTGILF GFQNAHAYED QIGYVEIFKQ LGVGIVQMCY
NTQNLVGTGC YERDGGLSGF GREIVAEMNR VGVMCDLSHV GSKTSEEVIL ESKKPVCYSH
CLPSGLKEHP RNKSDAELKF IADHGGFVGV TMFAPFLAKG IESTIDDYAE AIEYVMNIVG
EDAIGIGTDF TQGHGQDFFE YLTHDKGYAR RLTSFGKIIN PLGIRTVGEF PNLTETLLRR
GHPERVVRKI MGENWVNVLA DVWGE
|
|---|
| |